Gene detail

Detailed information of BRAKERFUXP00000027596.1 in Telmatactis stephensoni

Genomic Location: 000220F_pilon_pilon:303663...321302
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000027596

ATGgatgaaaaacaaactttaacaTCACTTTTCCACAGACTTTGCGAGTTGTCATTCCTACATGAGGCTGAATTAAGAGAAGATGCATACACTAAAATACGATATACAAGTTCTAGACGACGAAAACTGCAGACAAAGCTCTATGAGAAGTTGTTTGCTGAACTTCAGGCTCCTTGGCTTGGAGCGAGATGGAACGACAAGACATCAAAACAGGCCAACAAGGAAGGTTTAGATGTGTATGGGAAGCTCGCTGTTACGGTTTTCAATCTTAGGCTCTCTAGAGAGTTTGATAAAGCTGATTTGTTGGAGTATAACTATGTGAAATGGAAAGGTTTTACAGGATTATCAAAGAATGCATTTGATCCAAGTGAACCAATACAAGTCATTACTGAACCAACTGCAGTTTTAAGGTTCATTATAGCTCTATCTGGTACTGGACCGAAGCAGTCATCACCATTACTTGGTTATCAGAATGAATTTTATTCCACAAACTTACAACCTAAGGAATTAAAAAGCCTGTTACCAGAGGGTCCTCTACTCAGCACTGATAGCTATAAACTACGGAGTGAAGCCCTGCTTGCTGATCATTACATTCTCTATTCAAGtgATTTATTTGAGAGACCACCCACCATAGAGAACACTGCAAATGTTTGTGAAGGACATCAAGTGTTTCATGACATTATGGCACCAAGTCAAGGCAGAAATAGATTCTTTGCTATTCAGGAGACTGGAGAGGTTTTACATGACAAGAAAACAAGATTAACAGTGTTTGGAGCTCTGAGTCATGGGTATACAGATGATATGCAAGTTAAACTAGAGTTACCAGAATTACCATCTTCTACTGAAAAGACATTGGGTGTGTCATCCTTACCTTCACTAGAGTCCCTAGATGATGAAGGATTCCATGAATTAACAGATCCTTCTAATGGAACATCTCAGAGTACATGCCCCATTGTTACTGATATTTGGTCTGAAGCTTTGAAATTGTCACCACAGCAGTTCTATACATGGGAAATGGAAGGAAGGAGAGATGGAATGACTGACTGTCCATATATCACAGAGGCAGGTCCCACTGTCTTTGATGAGCTTTATAACCTTGTATCTAGACAAGTGTCCTATCTAGTCAAGACACCCACACAATATAAATTGGTGTCCATAAAGAAACTGGTTGATCATTCACTGGATGTACTAATAGGTGTGCCAACAACAACATTTCTTTATAACATGGAATCATTTGATTTCTATGTTAACCCTGATATCAGACTGACTGGATGCTCCCTAGAGTCACTGCATAACACCTTAAGTAAACTAGCAACCATAGGAACTGACTATATACACCTTGTTGAGTTTATCAACCAAAATGAACTGTCTGGAGGTTTGGTTTTGCATGCTTTTATAGGAGGTCTAAGAAACTATTTACAGTGTTACAGAGCTACAGTATTGAGTATTGATGCATCTTCAGTGCAAAGTCCATCCCAATTAACCTTTACATTTCAAAGTCTAGGAAAACAATTGAGGTTTTTATCAGATATGTGTATGTGCTCCACCAAACCCAAAAGACCACCAAGTGACAACAAAGCTTTTCCTGTAGGTGTAAAGCTTCTGTCATATTTGTACAAACTGTGTTTGGAACACTCTAGTACTGACTATTACCCTGTCTTGCTGTCACTACTCAAACACAGTTGCGCACCATATATTATGTTTATACAACAATGGGTGTTTCAAGGCATATGTCGAGATGTTTATGAAGAGTTTATTATTGAAGTTGATGATCAGTTCCTTGCATACAGAGATAAACATTTCTGGAGTCATGGGTTTGTAATCTCAGAGATGGACAAACTTGATTGTGTTCCAATGTTTCTCAGTGAATTAGCCAATGACATATTTGTGTGTGGTAAATCCATCAACTTGATGAAGCTCTGTTGCCCAAATCATTTCTTGTGTGACTCTGGAGTTCCTCCACCCAAGATGGAAGTCACATTTTCCATGAACAAGTTAAAGGCTATTGATCAAAACTGTCTTGATTATGTTCATGCAATTGAGGACATAGCCAAAGCAATTAAAGACAAGAGAGAAAAAGAGAGATTAGCCCTGGAAGAAGCTAAGGAAAAGGCTGTTATGGAAGAAAGAGCGCGTGCAGAGAAGGCATTGGCTGAAGTAACAGGTCTCATCCAACAAGTAAAAGAAGCCATTGAGGCAAAAAAGAAAGCAGACTTAAAGATGCTAAAAGAGCAAATGGAAGAAGCCATTAAGAAAAGACAGTTAGATAAAGAAAGAGAAACTGAAGTGGATAATAAATACATGGTTGATGCTTTGAATCGGGCAGCAGCTGAAGAAGAACTAAGAGAAAGAGCAAGGCAAGAGTTGATTGACTATTATCAAAAGCTAACAGAAGAAATGGACCGACGTGAAGAAAGAGCTCAATGGAAAATCAAGAGGCTCAAGCTCAACAGTGTTAGATCTCAATTCTTGGCAGAGGATCAGGCAAAGTTTGAAAGGCTTGAAGCTGAAGCTTCAGAAGTTCGTACCAAAGAGAAGGAGGAAAGAGACTCTTCAGAGAAGAAAACAGTGTCTGGGGACAGTGATTTTTCGGCCACTTCACAAGCTTCAGAGCGCCCAGCAGAGTCATTGCCTAAACAATCTGATTCCCCAAGTTCTGCCCAAGCTTTAGCCCAACAATCGCCAACAGTTGCCAGTCCAAGTCTGGTGTCTCTCATAGCTAGTGGCGTCAAAACAGATGCCCTGGTTAAGTTTGATGCAAACAAGTCCATAAATTCTTCCAATGCTTCAGATTCGGGCTTTATTCCTGGTACTACAACTGTAACTGGAATTCCTGGCAAAGATACCAAGGATGCATCAAATGTCTCAGTGCCCTCAGTTCGTAAGAAGTGGTCAAGTAGTAAGGAAGCTAAACCGGATGATTTGAAGTCAGAGTCAATTACTTCTAGGCGAACATGGGATTCAGCTGCTGGAGATGTTACTCTAGCTGAGTCTCCTTTTCCCCATGGTCATCCATCTGATTCATCCATCCAGTTTTCTATGTATGCGGACAAAAAGGTGAACACCCCAAAAACTGGTGAAGTTAGTAGCACAAGTATTCATCCTTCTCCTTTACAGCAAGTTTCAACTCCTAATCCAAGCGATTCTAGTATTGGAGATCTCCTTTACCCTGTTAGCAAAGAAGGTGTTACTAAAGTAATCAAGGATGAGGTCTCTACCAAAGAAGAACCAAAATCAAACGAACAATCTGGAGAATTAGCCCATCCATCAGATGGAACTAGTGGAATCACAAAGATCTGTAGAAGACACAAAATTTTGAGGAAGAATCAAAGGAAGATCCTGTCATTCAGGATTTTCTACGTAGTCTCTCCAAAGGTGTGGATGAAATCAGGATCCCCTCCAAGCGGTCATCCCTCTGATTCAAGTATGGGTGACTACATCACAGAAGGCCAGGCAACTGAGGGACTGAGAATCACTAAGACGAGATCTTCCTTATGGGCACCCCAATCAAAGTAG

Transcript

BRAKERFUXT00000027596

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17681 all species →	GCP_N_terminal	Gamma tubulin complex component N-terminal	Domain	Interproscan
PF19340 all species →	GCP6_N	Gamma-tubulin complex component 6 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007259 all species →	Family	Gamma-tubulin complex component protein	Interproscan
IPR041470 all species →	Domain	Gamma tubulin complex component protein, N-terminal	Interproscan
IPR045818 all species →	Domain	Gamma-tubulin complex component 6, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19302 all species →	GAMMA TUBULIN COMPLEX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0000923 all species →	Cellular Component	equatorial microtubule organizing center	Interproscan
GO:0000930 all species →	Cellular Component	gamma-tubulin complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0051321 all species →	Biological Process	meiotic cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000027596.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000027596.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

13TPM > 0

6Conditions

1.0Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.20	0.35
Club-tips	3	2	0.14	0.35
Actinopharynx	3	3	0.47	0.96
Tentacles	3	2	0.13	0.25
Pedal disc	3	2	0.12	0.19
Body column	3	2	0.11	0.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.35
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.24
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.35
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.06
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.96
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.34
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.10
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.25
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.14
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.19
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.18
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.28
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.04
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.