Gene detail

Detailed information of BRAKERFUXP00000028958.1 in Telmatactis stephensoni

Genomic Location: 000216F_pilon_pilon:460102...470586
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000028958

ATGGAGGTCAGCAGGGAGGAGGCAAAACGGATTCTTAGAAGACTAGAACTTGAAGCTTATTCTTCTATTATCAGTACATTTAGAGCACAAGGGGACTTAAATAgagagaaaaagaaactaTTGACAGATCTAGGTGTTCATCTAAGCATATCAACTGAGCGTCATCGAGCAGAAGTCAGGAGGGCGTACAGTGATGATAGACTTGGAGCTGTTGCAGAATGtaTTGTTGGACCAAGTACTTGCTCAGAGTGGGCAGCAGAGGGACGGCGGCTTGTACCCCTGATGCCACGCCTTGTGCCGCAAACAGTTTTAAGTGGGACAGCAACAGCATCAGCTAATGCTGCTGCAGCATCAAATGCACAAATTGCACAAGCCAAAAAGGTGTCTACTCCATCTACTGTACCCCAGACATCAAACACTGCTGCCACATCTGTGTCCGCTAAGCACTCTCCTGTTAAACCACTAGCAAGGCAAAGCTCAGAAACTATAGACGTAGAAGATGATAGTGAAGATAGCAAGACAAAAAAGAAGCGTAAACTAAGTCAAAGCATAACCAGTCCAAAACCTGTCCAAAAGATCTCCCTGAATCAATCCATGGTTGGACCAAAACCTGCATTAGCCAAAACAAGTTCAGTTAGCACAAGTACTATGACAAAAACTGGAAAACCAGCAGCATCAACAGGAACAGTCAAAGCTACTCAAAAACTCATGTTACCAGCTTCTGCCTCTCAGGTCAAACTGCTGACAAAAACAGTGTCCATTACTCAAACTGTCAGCCAAGCAAAAACAGTGCTGAACTACAAAACAGTTGCTGCTACAAACCCAGCAGCTGTGAAGGTCCAGACTGTTATGAGTCACACCACGCCCAAGGCCCAAGTCAAAATGGCTGTACCCGTGACGTCAAAGAATGTTCTGGTCCCCAAAGCCAGTGTTTCGACCAGTCCAACAAAGGCTGTAACAGGACCATCGCCTATCAAATCAGGTATTCCATTGTCTCAGTTAGCGACGTCCAAGCAGAGAGGAAAGCAGGCTACAAGGTTTAAACCCATGCCTGGTGCTGTTAAGTACAAGCCTGTTACTGCCCTTACAATGGGGTTGCCGTCAGCTCCTGTTACCATGGCGACAGCTACTAGCAACATTTCAGCTATAACAGGTACAGTCACTGCAACTGTAGCAAGCACTCAGCCTATTGTTAGAGTGATTCAGGTTCCTGGAGCAGTAAATGCAAGTGCAACTGGTAAAACAGTCCCCACAGTGACGTCAGGTCCTCCCAAAGTAGCCACATTACCAATTTCAGGCAGTTTACCAATGACCAAGATTCCCATCTCCTCTGCACAGACCACGGTTACAACCTCCACTCCCCAAGCCACTAGGTTAACCACTACAACTTCAAATACAACCATGCCAACCTCGGCAAAGactgttgtcatgacaaccatAGTGGGTGGTACCAAGAAGGTAGTATTGTCTGTGCCAGCACCAATATCACCAATCCAGTCCAAGCCTATTGTTAATGTTACTAAGGCAGCCAAAGTATCAGGTCTTGCAAATCAACCATTGCAAAGCATGGCAGAGAACACAATAAAACAAGATACTACCACTGTGGCAAAGACTGCTGTACCATCCTTAGAATGCACTGAACCTAGTAGTGTTTTACAGGCACCTACGCCCATCGTACCCAAGCAAGGTACACAAGTGTCGACCAGTCAAGTCAGAAGTCGGCCACTGCAGACCCTTCTCCCTGCCCCACCCAAACCAGTTATTGTGGCCCCAACCACTAGTTTGTCCAGTAATTCtggtgtgaggaaactgccacagATTCTTCCTGCACCTGCTAAAACGACTGTCTTGGTACCCATGAGTACACCAGCCACCCAGACAGTGTGTACCACAGCTTCGTCCTCAGTAAGCACAACTGTTCACCCTAAGGTACCACTGGTCCAGTTTGTAGCAAAGTCAACACAACCTTCAGTTGCAAAATTCACCATGTCCAAGACTGTGCCAGTGTCAAGTGCCAAGGTATCCAGTGCACCAGCAACTGTGCAACAGCCTATAAACCAGGCACTGATTGCAAGCCAGGCAATACCAACTGGAATCAAAAGCAGTGTAGCAGTACCTGAAGCAAAACTCTCAACGGCATCTGAAAGTTCTCTCCCATTTTCAGAACAAAATGAGAGCAAAAAAACTATTGTCTGCACTAAACATGATGACAATCTCATGCATAAGGAACCCTTGGAAAGTAGGGATAACAAAACTGAAGGAGACAGCAATACTTCTTCTGAAGATGATTCCCTTCTGGTTTGCTCTGAGACTATTGACTGTGGGGCAGGCCTTCAAGATGTGTCTTCCATTCAAGAAGAGACAGTGAGTACGTGTCCAGTGGATGTTCTTGCAGTAAGCACTCCTGTGAAGCGTACAGAACTATCTAGTGCTGGACAAGAAGAAGTAGTTTCAGCAACTGGAGAGGACAGAACCAGTCCTGTTGTAGAGAACTCTAATTCAGCTGCCAACAAAAAAGTTGTTGTTGAAATGTTGGATTCTTTTGATTCACCATCATTGGGCAAAGGAGACACAAATTGTGTATTCATTAATGATGATAAGAACAAGGATGAGCACATAATGGACTCaaatagtgaaaataacatgaaacTTCATGAAGATATTGAAAGAGTTGTCAGTCATGAAAACTTTGATGCTGTAAGCTCATTCCTAGAGACTTTTGCTGGTGAGTCCTTTGAAAATTCGAGCAAAGACTCAAGAGAAGACAATGTAAATATTTTACCAGAAGTTAGTAATACATTTGAGGAGGAACATTTAAGCATAAGTGGACAAAATGAAAATCGATCCTCATTTTCTCAGCATGGAAATGCAATACAAAGAACTTCATTAGGTAATTCTTCTGAACAAAATTCTTTGCTAAGTGCATTTGACATTTTAGACTCTCCGGTTGTACACAAAGTCGGAGAATCACATGTGAGTTTATTACCCTCTGGTTGCTTTGGTTCTAAACCTACACCATCGCAAAAAGATATCCATAGTTTGCACAAAGAATTCTCCGCAGAAAAAACTTTGGATGGTAGTCTAAATGTTAAAAGTTTGAAGACTTTTGCTGAAAGTTCACTTCAACAGAATATTCAAAACTCAACTCATTCGCATGATATACAAAGGAGTTTATCACTAAATTCAAGTGAAATCAGTGAGACATGTTCAACAAAATTAAGCCTCAGTAATAATGAGGTAGCAACAAGTTCCAGTCATGGTCAAGAACTGACAGAAAGTGAGAAGCTTGCTCTGGAAGCCATTGCTAATGTTAGGACAAGTggtagaaaaagaaaaccgCCAACAGTGCTGACATTGTCACCACCAAGACAAAGTACTGGATGGGTCAGAGGAGCATTAAGTTTGCTTCAAAAAGTTTGCAGTTACAGAGgtcaaggaagaaagaaaggtgATTATAGTGCAGCCTCTTGGTTCCTTCGACCAGTTGATCCAAATGAAGCACCTGGATACTTCAAAGTGATCAAAAATCCAATGGACCTCAGTACAATTAAAACTAAACTTGAGTCTGGTGCCTACCAAGATTACATGGAGTTCCATGAAGACATGGTTTTAATCAAGACAAACTGCTTCAAGTACAACCCCCCTGGACATGACATCAGGAAGGATTGTGAAGAAGTGTTCAACTACTTTGATTCAGAATATGAAAAAATGTTGGAAAGATGGGAAAAGTGCCATGTTTCACCAGCAAAGAAGCCTCGTACTTTGCCAAAACAAGAAATAACATCATCTGCATCATGGTAG

Transcript

BRAKERFUXT00000028958

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF03735 all species →	ENT	ENT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036142 all species →	Homologous_superfamily	ENT domain-like superfamily	Interproscan
IPR005491 all species →	Domain	ENT domain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR033482 all species →	Family	BRCA2-interacting transcriptional repressor EMSY	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16500 all species →	BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25790	EMSY; BRCA2-interacting transcriptional repressor EMSY	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000028958.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.