Genomic Location: 000205F_pilon_pilon:589275...594763
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000029293 |
| Transcript |
| BRAKERFUXT00000029293 |
| Protein |
| BRAKERFUXP00000029293.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007405 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10075 all species → | CSN8_PSD8_EIF3K | CSN8/PSMD8/EIF3K family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006746 all species → | Family | 26S proteasome non-ATPase regulatory subunit Rpn12 | Interproscan |
| IPR000717 all species → | Domain | Proteasome component (PCI) domain | Interproscan |
| IPR033464 all species → | Domain | CSN8/PSMD8/EIF3K | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12387 all species → | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0005838 all species → | Cellular Component | proteasome regulatory particle | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008541 all species → | Cellular Component | proteasome regulatory particle, lid subcomplex | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03031 | PSMD8, RPN12; 26S proteasome regulatory subunit N12 | - | Proteasome | ko03051 | deepkoala |
Transcript abundance of BRAKERFUXP00000029293.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
