Genomic Location: 000199F_pilon_pilon:532756...558050
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000029635 |
| Transcript |
| BRAKERFUXT00000029635 |
| Protein |
| BRAKERFUXP00000029635.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003906 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21289 all species → | EDC4_C | Enhancer of mRNA-decapping protein 4, C-terminal | Domain | Interproscan |
| PF16529 all species → | Ge1_WD40 | WD40 region of Ge1, enhancer of mRNA-decapping protein | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044938 all species → | Homologous_superfamily | Enhancer of mRNA-decapping protein 4, conserved C-terminal domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR049404 all species → | Domain | Enhancer of mRNA-decapping protein 4, C-terminal | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR045152 all species → | Family | Enhancer of mRNA-decapping protein 4-like | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR032401 all species → | Domain | Enhancer of mRNA-decapping protein 4, WD40 repeat region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15598 all species → | ENHANCER OF MRNA-DECAPPING PROTEIN 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000932 all species → | Cellular Component | P-body | Interproscan |
| GO:0031087 all species → | Biological Process | deadenylation-independent decapping of nuclear-transcribed mRNA | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12616 | EDC4; enhancer of mRNA-decapping protein 4 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of BRAKERFUXP00000029635.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
