Gene detail

Detailed information of BRAKERFUXP00000032579.1 in Telmatactis stephensoni

Genomic Location: 000167F_pilon_pilon:651776...658581
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04042 all species →	DNA_pol_E_B	DNA polymerase alpha/epsilon subunit B	Family	Interproscan
PF00091 all species →	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF18018 all species →	DNA_pol_D_N	DNA polymerase delta subunit OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217 all species →	Family	Tubulin	Interproscan
IPR002452 all species →	Family	Alpha tubulin	Interproscan
IPR024826 all species →	Family	DNA polymerase delta/II small subunit family	Interproscan
IPR041863 all species →	Domain	DNA polymerase delta subunit 2, C-terminal domain	Interproscan
IPR007185 all species →	Domain	DNA polymerase alpha/delta/epsilon, subunit B	Interproscan
IPR036525 all species →	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR003008 all species →	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR040663 all species →	Domain	DNA polymerase delta subunit, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10416 all species →	DNA POLYMERASE DELTA SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006271 all species →	Biological Process	DNA strand elongation involved in DNA replication	Interproscan
GO:0042575 all species →	Cellular Component	DNA polymerase complex	Interproscan
GO:0043625 all species →	Cellular Component	delta DNA polymerase complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02328	POLD2; DNA polymerase delta subunit 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.