Gene detail

Detailed information of BRAKERFUXP00000034872.1 in Telmatactis stephensoni

Genomic Location: 000147F_pilon_pilon:488656...495995
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000034872

ATGGAATTTGTTGTTCCCGTAGAAAGTCGTGATGTTGTACAGGAAAGTTTAAAACACATCAGCCGTTTATTTAACGGAGTAAATGTTCAACTCTCGACGTCTACAGCAGAAAAACAGTGGATCAAGTTGACTTGTGAGCTTGAAATTGAACAAAGGAAAGAAGCACTCCAGAAAGCCAGGGAGTACATTGAAGCACTTGCCAGTCCAGAGATGACAGAGTCTATATCTGGTTTGACTTTCTCCGACGTGGAAGAAATTGCTAAGAAGTTTTCTGTACTAGCTATTTCTGATGACGAGAAACTTATTCTAAAGGGAAGCGAGTTCAATGTCACGCTAGCTAAATCATGGATCGACGAAGAATACAAAAACGCTGGAGAAATGGCAAGTGCAACTGACAGCCTTGTAGAGGAGTCTCCAAGCATACAGTCTTGCAAAAAGTTTGCAATCAAACTTGGCTATAGCAAGGAGGATGTAGACTTTGTAGCCAAGACGTTGGGACCTGGATTGGATCAAAACAAACTGTTAAAAGAACTCGTTCACCGCACGCGTTCAAGCGCTCAGGTTGCTGAAAGAAGTCGAAGAGCACCAGATATGGGGCGTCATAGTTATGTACCGCGGCACACAGTTTCAGGAAGGGAAATGGTTTCATTACAAAGTCGTTCTGTTGTACCTCGTGGTTTTGTTCCTCGACAGCCGATATCATCCGAAGGAGAAATACCACCACTAAATCGCTCAGTGACTGAGGTGGTCTCAAGGTCTACTCGACAAGACGAATGTGCTTTGCCTGATGGATTGGCATGTAGTAGAAGAGGTAATGGCGTTATGGCACGGTCATGGAATTCGACACCGGCAGAACAAGTTCAGGACAGTCTCCGTCCTATTGTTATTGATGCAAGTAATGTTGCTATGAATCATGGAAATCACCAAATCTTTTCTTGTCTTGGTATTCAGCTGTGTGTAAAGTGGTTTCAAGCACGTGGGCATAAGGAAGTGTTTGCACTTTTGCCACGTTGGCGAAGAGAAAAACCACGACCCGGCTACCCCATGAAAGATCAACACATTTTATTGGAACTTGAAAAAGAGGGTGTGGTTAAATATACCCCTTCACGTCAAGGCATTGGTGGTAAAAACATTGTTTGTTACGACGATCGTTTCATTGTGGATTTAGCGGATATGAATGATGGGGTCATCGTATCGAATGATAACTACCGCGACTTACTTCAAGAAAAACCTCAATGGAAAGAGGTGATCGAAAAAAGACTCTTGATGTTCTTTTTTGTTGGTAACATTTTTATGGTTCCCGACGATCCTCTGGGAAGATATGGCCCAACGTTGGAAGAATTCTTGATTAAAGGAACAAATTCTCGCCACCCACGAATTTGTCCTTGGAATGGGCGTTGTACATATGGAAAGAAGTGTAAATTTTATCATCCCGAGTTTAATAGAAGGTCACAAGAACTAGATCAACAgtattattttgatatttcttCAACTCAGGCCGAGCAAACGtatcaacagcaacaacaacaaccaccacccCATCAACAGAACGCATCGAGTTATCCATCCTCGACTTTCACCTATACAACACCACCTCAATACTCTTACACTCCACCAGATAACCATCCATACACCAACAGTTCAATTGAAGAACATTTATTCAATCAACTTATAGATATATTTCAAGACCAAGAACGATCTACAAGACAAAGAAAGATCTATGCTGGCGACATTAATCCCCTCTTAACATGTGGACTTTGTGGAGGATATATGATTAAACCCACATGCATCACAGAATGTCTTCATACCTTTTGCAGAAGTTGTATTGTCAAGCACTTGGGTCAGAAAGAAATGAACGAGTGTCCGAAATGCAACATTGTCATCCATGAAACTAACCCATTGGAAATGTTAAGGGCAGACCAGATGTTAGAAGATGTCATCTATAAATTATTACCAGAATTACAACAAGATGAAGAACGACGGGAAAGAGAGTTTAATAAGAAAATGAAGAGGATGCAGGAGGATCCATCATTGGGGAGTGACAGGTTACAAGATCGTGACTCCCCAGTCAATACAACAGCAAgtacaacatatcaaacaaatatTTCGTACAATAACTACCACAGGGATGAACCACAGATCTGTATATGTCTGGAATGCTGTAGTGACTCCGATTCAGATATCCCTGTAAAACAGCTTGTGAGAAGATACATCAGATGTTCCTCCCAGATGACAATAGCTCATGTTAAAAAATACCTCAAGCTAAAACTCAGTTTGACGGCAGCTGACCAGGTGGAAGTTTTGTGTAATGGAGAAATCATGGGCAAAGACCACACTCTTGAGTTTGTATATATGACGCGGTGGAGAGTGAAAGAAGGAAGAGTGATGACTCTCCAATACAGACCTCGTATTGATTTCCTGTGA

Transcript

BRAKERFUXT00000034872

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000417 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UFD\|RAWUL · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16207 all species →	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan
PF11977 all species →	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18039 all species →	UBA_6	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032443 all species →	Domain	RAWUL domain	Interproscan
IPR021869 all species →	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR051101 all species →	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR040546 all species →	Domain	Rege-1, UBA-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876 all species →	N4BP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000034872.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000034872.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

6TPM > 0

6Conditions

10.1Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	0	0.00	0.00
Club-tips	3	2	4.65	10.12
Actinopharynx	3	0	0.00	0.00
Tentacles	3	3	5.49	6.34
Pedal disc	3	1	0.84	2.53
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	10.12
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	3.83
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	6.34
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	5.68
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	4.45
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.53
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.