Gene detail

Detailed information of BRAKERFUXP00000035554.1 in Telmatactis stephensoni

Genomic Location: 000133F_pilon_pilon:435156...450339
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000035554

ATGGATGCACGACAAATGAAAAACTTAGATGAAGTCTACAAGAAGTGGGAAACGAAAAGCTCTGGTGGCTCTTATGCCTCTGGTTCTCCATTGCAAAATGGAGGTACGAGCAGTGCAGGTTCGTTTAAAAATGAATGGGCTAAAAGATTTGAAGGAATGGATCGTGTGCCACCAAATCGCCGTCCTCTGAGATCAAAGAAACGGCAAAAACCCAAGGATAACTTTGAGTCTCTCATGCCAGCAGTAGAGAgaaagttttgtgttgccaatGCAGTAATACCAGGGgtatttacaagagaaagacCATTCATGGGTAGAGGGTGTAGGACATGCTGTCCTGAAAGTGAACAGCTGCTTTATTCTGATAGCATCCCAACTAAAGGAATGCACAACATTCTCAATATTGCTGTTTATGCCAAACAAAATCTTTTTAGAAGAATGTTTTGCCATGCCATTTTTATCTGGAACCGTAATGTTGGCCCAACATTTCCTGATGTCACAAAAACAGTCCTGGAATCTGACAGAGTGAAAAACTGTATCTTAAACACAGTTTATAATGAAAATACAACTGGATCTCATGTACAGAAAGCAGAAGAATTAGAGAAGAAAGACAAAGCAAGACAGAAACAGGTGTCAAGATTGAATCACAAAGCTAAAGGAATTCTGGTCAAAATGGCTGCTGGAATTTATAGGAATTTGATCAGATTCACTGGTTGGTTTTTGTTCAAGTTATTTGGTAGATTACTGGATAGTATACAGATCCATAAAGGACAAATTGAAATGCTACGGCAAGCAACGGAGGAAGACAAACCTCTGGTGTTTCTTCCCCTCCACAAAAGCCATCTTGATTATATCCTGGTAACTTATGTACTATTAACTTGTGATATCAAAGCTCCACATGTAGCTGCTGGAGATAACCTTAGTCATATGCCATTATTCAGTTGGTTAATGCGTCACCTTGGTGGATTCTTCATTAAAAGAAAGCTAGATCACACAAGCAAAGATGACTTATATAAATCTATTTTACAAGAGTATGTTCAACAGTTGCTTGAAAATGGGCAATACCTTGAAATATTTATAGAGGGTAGCAGATCACGTACTGGTAAGGCGATGGTTCCAAAGTCTGGCCTTTTGTCATTAGTTGTCAATGCAGTTCTTGAAGgCACTGTTCCTGATGTTATGATTGTCCCTGTTAATATATCCTATGAAAAGTTATTTGAAACAAGTTATTCAAGAGAATTATTGGGTGAACCTAAAAGGCCTGAGACATTTTTAGAAGCTGTAAAGGGTATTTGGGAAGTTCTTGGTGCACGTTATGGTAACATCAGGATTGATTTTGCACAGCCATTCTCATTAAAGGAGTTGTCACGCTGTATGGATTGTTCACCTGCATTGCAAAACTTTGGAAGTGAAATGGTGGCTAGATCCTCAGTGACATCTTCACCAGCATCATCAATGGTTAGAAACTACTCTGATGTATCACTTTCAGACTTTGGAGAAGAACAGTGCTTTTTGTTGACTAAAGTACTGGGTTACCATGTTATTTATGATGCTGTCCAGTGCAGTGCAGTAATGAGTACAAATATTCTGGCTTTTATTCTACTTTATATTTATGGCAATGGTGCTACTTTAGAACAGTTAATAGATTCTTTTGATGAACTTCGAAAAGAAATTATAACAAGAGGAAGGGATGTTGGTTTCAGTGGTAAAGTGCCTGATGTAGTTGACCATGCATTAGTTATGCTACAAGATTTTATTGAAGTCCAACAGAACAATAAAGAAACATTTATCAAGCCTTGTCTTACAACACCACAAGTTATTGACTTGCTGCATTATAGTAATCTGgtTCTCTGCATATTTGCAATGGAAGCTGTTGTTGCTTGTAGTATTTGTGCTGTTGCCAAGGAAAGGAATGTTGATGTAACAGACATTGAACAAGAGCAGACACTACCTCAGAGCCAGATCATTGACAAAGCTAAAGACCTTTGTGAATTGTTACAAAAGGAGTTCATTTTTACCCCACCATGCGAATCATTAGAGACCTGTCTTGTTGAGACATTAGAGACGTTTATGTCCAGTGAAATTATCAAGTGTACTAATCAGCAAGCGTCTAACACACGTGACTGGGCTCACAAGTTTTCTGTCAGCGCTTGGGACGACGACGATGAGGACAGCGAAGAAATGCAAAGCGCATTTGACCCTGAATATAAGCTGTCCACTTCAGAGATGGAGCTCTCAAAGCTTAAAAACTTCCAGTCTTTTCTCTCGCCGCTGATTGAATCATATTGGGTTGCTGCTTGTGGGTTGCTATGGTTACCAAGCCAAGAtttcacagAAAGTGAGTTTTTAAAGGCAGTGCACGATTGTTCCAAAGAAAGAGTAGCTGAAAAAGTAACAATGTACCCTGAGAGCTGTTCGCTGGAGCCGTACCGAAACGCTATTCGTGTATTTAAAGAGAAGAGGATCATTGAAGTCAAGAACAACGAACAAGGGCAAAGTTTTCTGCGTTTGTCAGACAGCTATAGCTCTGAAACTTATCTGTTTGAATTTATTGCACACATTGGCCAATTCAAAGCTTAA

Transcript

BRAKERFUXT00000035554

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19277 all species →	GPAT_C	Glycerol-3-phosphate acyltransferase C-terminal region	Family	Interproscan
PF01553 all species →	Acyltransferase	Acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045520 all species →	Domain	GPAT/DHAPAT, C-terminal domain	Interproscan
IPR002123 all species →	Domain	Phospholipid/glycerol acyltransferase	Interproscan
IPR022284 all species →	Family	Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase	Interproscan
IPR041728 all species →	Domain	GPAT/DHAPAT, acyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12563 all species →	GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004366 all species →	Molecular Function	glycerol-3-phosphate O-acyltransferase activity	Interproscan
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00629	GPAT1_2; glycerol-3-phosphate O-acyltransferase 1/2	EC:2.3.1.15	Lipid biosynthesis proteins	ko01004	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000035554.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

20.3Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	8.03	13.33
Club-tips	3	3	1.74	2.33
Actinopharynx	3	3	2.55	4.57
Tentacles	3	3	1.59	1.88
Pedal disc	3	3	4.04	5.44
Body column	3	3	12.08	20.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	13.33
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	5.97
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	4.78
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	2.33
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.77
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.12
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	4.57
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	2.21
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.88
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.88
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.61
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.27
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	5.44
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	4.15
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.52
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	20.29
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	9.89
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	6.07

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.