Gene detail

Detailed information of BRAKERFUXP00000035643.1 in Telmatactis stephensoni

Genomic Location: 000144F_pilon_pilon:619392...633372
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000035643

ATGTGCTGCTCATGGATAATCAGCTTTTTTCGGCATTTATTTTACTCTGATGGCCAGTCTGTACCTCCACCAAAGGGCCGGAATACAGAGGTGTTCTTTCCTGATGTTGAACGTGCAGAATGGTTGAACAAGATGATTGTTCAATTGTGGCCATATATCAATGATATGGTTGTCAAAATTCTCAAGGAAACTGTGGAGCCAGAAATTCAGAAAAATGTCCCAGGATTTTTAAGTTCCATTCATTTTGCAGAGCTGTCTCTTGGAAACCAGGCCCCTCGCATTGGAGGAATCAAGACCTATACCCAGAATGTGAAACGTTCAGAGATTATAATGGATGTGGACCTCATTTATGCTGGAGATTCTGATATTAAATTGTCAGTCAAAGGTGTATCTGTTGGTATTGAAGACTTGCAGCTACGAGGAACTTTGCGAGTCATCTTGAGCCCTCTTGTACCAGCTTCACCTTTGGTtggaggggtgtctgtcttctTCCTCAACAGACCAGACATTGACTTTGATTTGACAAATCTATTGAACATCCTTGACATCCCTGGACTGAGTGATATTCTGAGAGGAGTCATTGATGATGTAGTCGCATCATTTGTAGTCTTACCAAACAGAATTTCTGTACCACTTACCGATATTGACCCATACAAACTGAAATATCCAATGCCTGATGGGGTCCTGCGTATCCATGTGCTTGAAGCTAAGGACTTGGAGAGGAAAGACATTGGTGTATTCTCAAAGGGATCGTCAGATCCATATGCTGTTATTAAAGTTGGAGCCCAGACATTCAAGACTGAGACAAAAGAAGAAACTCTGAACCCCAAATGGAATGAAGTATTTGAGGTGTTTGTAGATAACTGCCAAGGACAAAAGGATCAAGATCCAGCTGTTGATGAAGATAAAGCATCTGATGATGAAGCCCTTGGATCTGTTGAGGCTGATATTAGTACTGTATACAGCAAGGAAGTGCTGATCTGTGGCTGCCATTGGAGAATGTTAAAAGTGGACAAATCAATTTACGTTGTATTTGGTATACATTTACCTCAAGCCCTGATGATCTTTCTCCTGTGTATAGGTGTACAGCCTGAAGATGCCATACAGGGAGAAGAGATGTTAGGAACTGCTGCCTTGTTTATTAAACTGGACTCAGCCAAGAATCTCCCTGTTACCAACCCTGCTCGTGGTACAACTAGTGCATTCTGTAAACTGACTGTTGGCAACAAGACCCTTTGTAGCAAGACAATCCAAGATTCCATTAGTCCAGTCTGGGAGGAACCATTCCGATTTTTGATTCATGATCCTAAGTACCAAGAACTGGACATCGAGGTGTTTGACACTATTAAAGAAAAGAGCATTGGTAAACTTGATCTACATCTTGATCGCCTGCTCAAAGATGATGACATGACATTTGAACAGCCCTTCCCACTCAAGGATTCTGGACATAACAGTACCATTACTCTTACACTTCAACTCAGATCTATGGTAACACGTGATGATGACACCTCTGacgaagaagatgatgatgatgaagaagaagaagaagctggCAAAGAGAGTTCAGAGCTCATCCCATCCAAAGATGCCAAAGAAGGTGAAAgTAAGCCAACTGTACGCAggagaaaacgaaaaaaagctCCTAAAGAGCAGATCAAAAGgGATGTGACAGGTGATCTCTATTTCAAGATTCAGTACTTCTCCCAAGGCTGCAAACTTGTTGTTGACAAGATGAAAGCCAGAGACTTGATGCCATGTGATTCTGATGGTCTGGCAGATCCCTACATCAGGGCATACCTTCTCCCTGACAGATCACGAAGTGACAAGAGAAGAACTGATGTTGCTAAAAATACCTTGGCCCCAACTTTTGATGAAAGGTTTGTGTGGATGATAGCTGAAGATAAACTCAAAAATCATTCATTGGAATTGTCTGTCAAGAATGACGTGGGTTTCTTCTCTAAGAGCAAAACCAACATGGGAGATGTTGTAGTTGATCTTGGCAAAATTGACCTCAGTAAACCATCTGCCGAGTGGCACATTTTGCGTGATCCTACAGAGGAAGATTaa

Transcript

BRAKERFUXT00000035643

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001222 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF17047 all species →	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037749 all species →	Domain	Extended synaptotagmin, C2B domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR051634 all species →	Family	Extended Synaptotagmin	Interproscan
IPR039010 all species →	Domain	Synaptotagmin, SMP domain	Interproscan
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45761 all species →	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006869 all species →	Biological Process	lipid transport	Interproscan
GO:0061817 all species →	Biological Process	endoplasmic reticulum-plasma membrane tethering	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0008429 all species →	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000035643.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000035643.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

7TPM > 0

6Conditions

0.1Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	1	0.01	0.03
Club-tips	3	1	0.00	0.01
Actinopharynx	3	2	0.04	0.10
Tentacles	3	1	0.00	0.01
Pedal disc	3	0	0.00	0.00
Body column	3	2	0.01	0.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.03
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.01
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.10
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.02
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.01
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.02
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.01
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.