Gene detail

Detailed information of BRAKERFUXP00000036131.1 in Telmatactis stephensoni

Genomic Location: 000131F_pilon_pilon:585700...602069
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02747 all species →	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain	Domain	Interproscan
PF00705 all species →	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046938 all species →	Homologous_superfamily	DNA clamp superfamily	Interproscan
IPR022659 all species →	Conserved_site	Proliferating cell nuclear antigen, PCNA, conserved site	Interproscan
IPR000730 all species →	Family	Proliferating cell nuclear antigen, PCNA	Interproscan
IPR022649 all species →	Domain	Proliferating cell nuclear antigen, PCNA, C-terminal	Interproscan
IPR022648 all species →	Domain	Proliferating cell nuclear antigen, PCNA, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11352 all species →	PROLIFERATING CELL NUCLEAR ANTIGEN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006275 all species →	Biological Process	regulation of DNA replication	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0030337 all species →	Molecular Function	DNA polymerase processivity factor activity	Interproscan
GO:0043626 all species →	Cellular Component	PCNA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04802	PCNA; proliferating cell nuclear antigen	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000036131.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

17TPM > 0

6Conditions

3.8Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	1.88	3.70
Club-tips	3	3	2.65	3.76
Actinopharynx	3	3	1.85	3.09
Tentacles	3	3	1.90	2.47
Pedal disc	3	3	1.73	2.36
Body column	3	3	1.74	2.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	3.70
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.93
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	3.76
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	2.76
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.44
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	3.09
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.66
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.80
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	2.47
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.66
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.57
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.36
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.04
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.79
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	2.43
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	1.48
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	1.30

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.