Gene detail

Detailed information of BRAKERFUXP00000037546.1 in Telmatactis stephensoni

Genomic Location: 000105F_pilon_pilon:550009...559146
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007375 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17777 all species →	RL10P_insert	Insertion domain in 60S ribosomal protein L10P	Domain	Interproscan
PF00466 all species →	Ribosomal_L10	Ribosomal protein L10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043141 all species →	Homologous_superfamily	Large ribosomal subunit protein uL10-like domain superfamily	Interproscan
IPR033867 all species →	Family	Ribosome assembly factor Mrt4	Interproscan
IPR043164 all species →	Homologous_superfamily	Large ribosomal subunit protein uL10-like, insertion domain superfamily	Interproscan
IPR051742 all species →	Family	Ribosomal Assembly Factor uL10	Interproscan
IPR040637 all species →	Domain	Large ribosomal subunit protein uL10-like, insertion domain	Interproscan
IPR001790 all species →	Family	Large ribosomal subunit protein uL10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45841 all species →	MRNA TURNOVER PROTEIN 4 MRTO4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000956 all species →	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14815	MRT4; mRNA turnover protein 4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000037546.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

12TPM > 0

6Conditions

1.1Max TPM

0.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.57	1.06
Club-tips	3	2	0.62	1.06
Actinopharynx	3	2	0.52	0.99
Tentacles	3	2	0.56	1.01
Pedal disc	3	1	0.21	0.62
Body column	3	3	0.68	0.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.06
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.66
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.06
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.80
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.99
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.57
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.01
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.67
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.62
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.79
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.62
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.62

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.