Gene detail

Detailed information of BRAKERFUXP00000038892.1 in Telmatactis stephensoni

Genomic Location: 000094F_pilon_pilon:245649...249455
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000038892

ATGACTTATTTAGCAAGTATTTTTCTTGCTATGGCGTACATCCTGGGTAGCGTCCAGGGTGAAACAACCGTTCCTACACTTGTTAGCAAGGACTGGCCAGATGGCTTCAAGATGATGATAAAACTTCAAATGCTTGCAGACGTGAAAGAAGGATGGACAATGACACTCAAATTCTCCAAACCAGCACCAAATCTGCAGATCTGGAGGGCGACTATAGTGGATGCTTCCAGCGACAAAAAAGTCTACAAGCTAACAAACATGTCTTGGAATAAAGATTTCTCGAAATGTTCTGTATTTGAAGCGGCTTTCACGGCAGAGAAAGACCCTGGAACAGATGCACCAACCGCAACTGTGGAATTCCACAGGAAGACCGGTAACGGCGTAAATCTTGATCCTCACGCGTGCTCCCCAACAAAGCCTCCAACAACGGAGCCAAAGACGGCAAAAGAAGAGACAGCCATTCCCATACTTATAAGTAACCCTGTTGAATGGCCCAGTGGCTTTAAGATGATGATTCGATTCCAACTTCTTGACGACGTAAAAGGAGGATGGACTATGACGCTTACTTTTTCAAAAGCTGCTCCTGGCTTACAGATCTGGAGAGCTGCCATTATGTCTGTATCCAAGGACAAGAAGGTGTACACCCTTACAAACTTGTCGTGGAACAAAGATCTTGGAAAGTGTTCTGTATTCGAGGCGGCATTAACCGCAAAGAAAACTGGGATCGAGGCACCAACTGCACTTGTCGAGTTCCACAGAAAGAACGCAGATAACATCCAGCTGGATCCAAATGCTTGCTCAACAGCAATACCACCAACAACATCATCTGTGACAACAGCATCTCCTGTGACAACAACACCGCCTGTGACAACAACATCGCCTGTGACAACAGAACCCGAGACTTCTCCTCTACCGACGACAACCGAGCAGCCACCAACAACAGTGACAACTCCTCAACCGACAACCCTCCCATCCTCACCGTCCACCCAATGGCCTTTGAGGAATGGTCAAACCACCACGGCGAGTATTGTTCAAGAATGGGAAACGGGCTTCAAAATGGTTTTCAAATTCCTGATCACAAAAAAGATGAAAGATGGATGGATCATCAAAATGAGTTTCTCTAAACCAGCCTTACAGTTGCAGATATGGAGAGCTAAGCTAATCTCCGTTTCAGATGACAGTACTGAATATTACGCCAAAAACATGCCATTCAATACTGTTGTTGCTAAATGTTCTGTGTTGGAGATCGACTTCATGGCGAACAAGAAAGTTCCAAAAGAACCAGCACCGAGTGTGGTGGTGACTTTATATCGTAAAGATGGTGCTTCGGCTTCTGATAGCTCAGTGTGTGCGACAACAATGCCACCAACCACAGTTAGTCCCATGCCGACGACGAAAGCACCTCCTGTGACAGCAAAGCCAAGTACTCAGCCACCAGCTCCAGCAACTACAACGGCACAACCACCAACACAACACCCAACAACTCAAAAACCTATAACGGAACAACCAACTACACAACGACCACAGACGGAAAGACCAACTACAAAGAAACCCAAAACGGTACAACCAACAACTCAAAAACCAGCCACACAGCTGCAAACCACGCCTAAAACTGAAATGCCAACCACGAAGCCTGCTACCGCTGCACCAACAACTTCTCCTGGTACAGCATCGCCAACTCCATACGACTACGATCAAATACTACACGATTCTATCCTGTTCTACGAAGCTCAGCGGTCAGGAAAGCTTCCCTCTACTAACAGAATTTCCTGGAGAGGAAACTCTGCAACCAACGACAAAGGCGACAAAGGAGAGGACCTGACTGGTGGATGGTATGACGCAGGAGACTTTGTAAAGTTTGGATTTCCTATGGCATCAAGTGTAACTGTGTTAGCCTGGGGAGTTGTGGAGTACAGAGATGCCTACAAAGCTGCAGGAGAACTGGATAATGTATTAGACTCTATCAAGTGGGCTACAGATTACTTTATTAAGGCACATACAGCAAAGTTTGAATTTTATGGCCAGGTTGGAGACGGCCATGTCGACCACGCCTATTGGGGCCGTCCAGAGGACATGACAATGAAACGCCCAGCGTTTAAAATCACTACAAGCAAACCAGGGTCAGACTTAGCAGCAGAAACAGCTGCTGCCTTGGCTGCCACGTCAATCGCCTTTAAACCAACCAACCCAGCGTATGCCAGTAAATTGATAAAACATGCTGAACAGTTGTACGAGTTTGCAGACAAGTACAGAGGTAAATACAGTGACTCCATTACGAATGCGGCGAGCTTTTATAAGTCATACAGTGGATACAAGGATGAGCTAGTATGGGGAGCAGCCTGGCTTTACAAGGCAACTAAGAAACAGGAATATCTAACCAAAGCCGAGACCTATTATGACCAGTTTGGCATGAATGGCAAACCATGGACTTTCTCGTGGGATGACAAGAAGGCTGGAGCGCAGGTGTTACTGGCAAAGATTACTGGAAAGGCTCGCTACAAACAAAACACACAAACCTATCTTGACAGTTGGTTACCAGGAAGAGATGTATACTACACGCCTAAGGGACTTGCCTGGAGGGACCAGTGGGGACCAACTCGTTACGCTGCCAATACAGCCTTCCTGGCACTCGTTGCTGCTGACATTGGAATAAAGCCAAGTGCCTATCGCATGTTTGCCAGGAAACAGATTCACTACATGCTTGGGGACGGAGGTCGTAGCTTTGTCGTTGGGTTTGGTAAAAATCCTCCTCTTCGTCCTCACCATCGTTCAAGTTCATGTCCTAACAAACCAGCCGACTGTAACTGGAATAATCTAAATTCTGCTGGTCCAAATCCACAAACCCTGACTGGGGCGCTGGTAGGAGGTCCAGACAAGAACGACAACTTTAAAGACGACAGGAAAGACTATATTCAAAATGAAGTGGCTACTGACTACAATGCTGGATTCCAATCTACTGTTGCTGGACTCAAGCACCTCTCCATTGTATGA

Transcript

BRAKERFUXT00000038892

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002226 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00759 all species →	Glyco_hydro_9	Glycosyl hydrolase family 9	Repeat	Interproscan
PF00553 all species →	CBM_2	Cellulose binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008965 all species →	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR001701 all species →	Domain	Glycoside hydrolase family 9	Interproscan
IPR033126 all species →	Active_site	Glycosyl hydrolases family 9, Asp/Glu active sites	Interproscan
IPR012291 all species →	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan
IPR001919 all species →	Domain	Carbohydrate-binding type-2 domain	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22298 all species →	ENDO-1,4-BETA-GLUCANASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0030247 all species →	Molecular Function	polysaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01179	E3.2.1.4; endoglucanase	EC:3.2.1.4	Two-component system	ko02020	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000038892.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

24.3Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	9.43	13.27
Club-tips	3	3	10.96	13.76
Actinopharynx	3	3	16.07	24.26
Tentacles	3	3	9.11	10.40
Pedal disc	3	3	7.28	9.05
Body column	3	3	6.96	10.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	13.27
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	8.49
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	6.52
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	13.76
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	11.99
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	7.14
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	24.26
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	19.09
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	4.85
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	10.40
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	8.69
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	8.24
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	9.05
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	7.49
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	5.32
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	10.70
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	6.52
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	3.67

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.