Gene detail

Detailed information of BRAKERFUXP00000039079.1 in Telmatactis stephensoni

Genomic Location: 000085F_pilon_pilon:604185...618121
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000039079

ATGGTTAAGAATAAAGTGCCACAAgagaaaaatattcaagtggCAGTACGTTGTAGACCTCGTAATACTAAAGAAGTAAAAGATGGCTCCCAATCTGTTGTGGAATGTGACGCTCATAAGCGTGAAATTACGGTCAAACAAGATCTCAGTACGAATACCAGTACAACCAAGACTTTTAACTTCGATAAGGTCTTCCCTCCCGATGCGAAACAGTTGGATGTGTACAAGGCCGTGGTCCAACCTACACTGGATGAAGTTTTGCTTGGTTATAATTGTACTATTTTTGCGTATGGACAGACAGGTACAGGCAAAACTTATACCATGGAGGGAGAGAGAAGTGAAACTAACTGCTCATGGGAAGAGGACCCTTTAGCTGGTGTCATACCAAGAGCCTTACACCAACTGCTTGATAAACTGAACAGTCAAAGTGATTGTGAATATTCAGTGAGGGTCTCTTTCCTAGAGATCTACAATGAAGAATTGTTTGACTTGTTGAGCCCTAGTTTGGACTCTCAGAAGCTAAGGATATTTGAAGATACTGCAAGAAAGGGTTCAGTTGTAATTCAGGGACTGGAAGAGATGGTAGTACACGATAAAGATGAGGTTTATCACATACTGGAGAGAGGAAGAGCAAAACGACAAACAGCAGCAACTTTGATGAATGCTCATTCCAGCCGATCCCATTCTCTCTTCTCAGTAACAATTCACATTAAAGAAAATTCTGTAAATGGAGAAGAACTTTTAAAAACTGGGAAGCTAAATCTTGTTGATTTAGCTGGCAGTGAAAACATTGGGAGATCAGGTGCAGTGGATAAAAGAGCCAGAGAAGCGGGTACAATAAATCAGAGTTTGTTGACCCTTGGTAGAGTTATCACTTCTCTTGTAGAAAGGGCTCCACATGTTCCTTACAGAGAGAGTAAACTGACAAGGCTTCTTCAGGATTCCTTGGGAGGACGTACCAAGACATCTATCATTGCAACAATCTCACCTGCTATTTGCAACATTGAGGAAACTCTCAGCACTCTGGACTATGCACACAGAGCTAAGAATATTACCAACAGACCTGAAATCAACCAGAGACTTACCAAGAGAGCACTCATCAAGGAATATACCGAAGAGATTGAAAAACTCAAGAAAGACCTCAATGCTGCAAGGGAAAAGAATGGGATATTTCTGGCTGAGGAAAATTACAATGCTATGCAGGCCAAGATACAAGCCCAGACAACACTTATTACTGAACACGAAGCAAAAATTGAAGCCATTGAAGCTGAGATGAAGAAGATCAATGATCTTTTCACTGAGACTCAAAGTGAGCTGGAAAGAAGGTGTGAAGAATTGCATGACACTAAGGAAAACCTTGCCACCACAGAGAAGACTCTTAGAGTAACCAAAAATTGCCTTAAAAAGACTGTTGTTGAAAGAGATGAGAAAGACTTTCTCCTGGACACTCACATGAGACATGAGTCTACTTTACATGTCAATGCAACAAGGTTACTTCATGTAGTCAACGAAAGCACAACTGATGTTAATGGACTTCACGAGAAACTAGAACGAAAGCAAAGTATTGAAGACTACAACAGAGCTGTCAGTAACTCTTTCAAAGACTCAGTTGGTGAAACTGTTGCATGCTCTGATGCCAATATTGCATCCTTTCAGAGGAAAAACAATAACTATTTTTCACTTTTGCCTCAAAGCATAGATGAATTCATTGTGGATAGACTCAAAACATGGCATGATAACCTTGGAAAGCAAGCAGGTAGCAGGTCAAAGCAGCTACAAGCAAACTCTGACAGAATTGATGAGATAATTCAGACTCAGAAAGATAACACTGAACAATGGGCTTTTGAGGTCACAAGAAGAAGTCAAGTAAAGAAGGATGAAGTCAATAGTGTGGTACAAACATTCCATGAGTCACATGGTCAGCCACATCTGAAATCAATGCAAGAAGCTTATTCCAACCAACTGACAGGGATGCTAGACTTGGCAGGATTCTTCAAAGAAAAGATGAATCAGTACTGCCAAGATGTCCAAATGTTTATAGAGGGTCAAAGTGCATTAATGGACAGCCTTTCACAGCTTGTAAGCAATCACAACTGTCAACAGAATCAGACTTTGGATTGTGTTACAAATAATGCTGATGCATTTGTGAGGACAGAAAAAGAAATGCAAAAGCTTATGAAAGAAGATATTATGAACAAGCTAGCATCATATCTTGATAGTGTGTTAGAGGGCCAAACATCGAGAATGCAGACACATGCGAATCAGATAAAGGAAAAAGTTCTTGAAGCCAAAGATGTTGAGGATTCCACAGAACAAGAATTCCAGAGTCGCTGTGATGCTCTTCACAACTGTGCAAATCAGTTTGCTGCAAAGTGTTCAGACTTGGCGTCATCCAGTATCAACGACTTCCAAAGCAAAACAGACCAGGCTGCTGAAGCACTTCGTGGCAAACAAGAACAGTGTACATTATTTGAGAATGAGCTTGTTAGCAACAACAGTAGGGTACATGAGCTTACTGAGGAGTGGCACAGAAATCTTGACGAATCATTCCAACATCATCTCGACATGATTCAAAAAAGTTATTGTGAACAAAAAACACTTATTCAGAACACCAGCGAGACCATAGAAGTcaaccaaaatgaaataaaagatgcATTGCAATCTCATCAAGACGAAATACAAGCAACGGTCATGAACTTGAAGCAAGAAATGACGGACCAATCAGAGTACAATATAGATTGGTCACGTGATGTGTTAACGACCATTCATGAGTTCGGTGAAAGTGTAGTTCATCATGTGACCAATGATATCAAAGAAGACCGTCCAACTGGTACAACTCCTCAAAGAAAAACGTACACGTTCCCAACAGAGTTAAAAATGGCTTCACCTCATGAAAGACTGTTGTCGAGATTCCACGATACCTACGTGACCCCTAGAACACCTAACTTGCCTATTTACAagAACAGTCTCTCGAGTTCGTCCAGTGATGAGCCAATTCCAGTCTTTGAGCTCAGCACTGATACTATTGATAGCGATGGCAAATGTGACATTTCTCAAGTCAAGAATTCAGTCAGCGATGAGCCGTTTGTAATCGATGAGAAAGAAAATTCAGAATTCGCACAACCCCAGGTACCTGTGAGACTGAAGTCAAAATCCTCTGAAACACCACGCGATAAAGAGAATTCTAGTAAAATTCCTCAACTGTCCAAACTGAGAACTCCTGTGGATCGAGTGAAAATGCCTCTACGCTCTTCTAATACGAAATAA

Transcript

BRAKERFUXT00000039079

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005291 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13931 all species →	Microtub_bind	Kinesin-associated microtubule-binding	Family	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR025901 all species →	Domain	Kinesin-associated microtubule-binding domain	Interproscan
IPR047149 all species →	Family	Kinesin-like protein KIF11-like	Interproscan
IPR047241 all species →	Domain	Kinesin-like protein KIF11-like, kinesin motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47970 all species →	KINESIN-LIKE PROTEIN KIF11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0008574 all species →	Molecular Function	plus-end-directed microtubule motor activity	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10398	KIF11, EG5; kinesin family member 11	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000039079.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

8.1Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	5.06	8.09
Club-tips	3	3	0.85	1.58
Actinopharynx	3	3	2.99	6.06
Tentacles	3	3	1.17	1.19
Pedal disc	3	3	1.12	1.61
Body column	3	3	0.93	2.15

Per sample · hover a bar for the full sample record

Show the sample table (18 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	8.09
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	5.83
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.28
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.58
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.76
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.20
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	6.06
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.83
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.06
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.19
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.16
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.16
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	1.61
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.90
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.86
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	2.15
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.42
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.24

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Telmatactis stephensoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

Direction	Partners	Most correlated partner	PCC
Positively correlated	16	BRAKERFUXP00000036276.1	0.973947508152917
Negatively correlated	3	BRAKERFUXP00000003263.1	-0.788538673564604

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Telmatactis stephensoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	ready	open →
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →