Detailed information of BRAKERFUXP00000039947.1 in Telmatactis stephensoni

Genomic Location: 000087F_pilon_pilon:691917...693922
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13920
all species →		zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00642
all species →		zf-CCCHZinc finger C-x8-C-x5-C-x3-H type (and similar)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000571
all species →		DomainZinc finger, CCCH-typeInterproscan
IPR039971
all species →		FamilyPre-mRNA-splicing factor CWC24-likeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036855
all species →		Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12930
all species →		ZINC FINGER PROTEIN 183Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0005684
all species →		Cellular ComponentU2-type spliceosomal complexInterproscan
GO:0034247
all species →		Biological ProcesssnoRNA splicingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13127RNF113A, CWC24; RING finger protein 113A-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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