Gene detail

Detailed information of BRAKERFUXP00000040232.1 in Telmatactis stephensoni

Genomic Location: 000072F_pilon_pilon:545393...563863
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000040232

ATGTCAGAAAAGTGGAAAGGTGTGCGACAGAAATTTACGTTTGATCGAAAATCAGCGCTCGACAATCGAACTTTGTCAACCGATCTAGGACCCGAATTATGCATTCGACTAATAAGCAGTCCCTCTGTACAGAACTTCTCGGGGTTGAAGACTAAGCTCAAATCGAGTTCAAGACAGTGGATCGAAGAGTTTTTAAACTTTGGTGGCTTGGAGGTGCTTTTTGAAGGCCTTCGCCGTCTTGGCGCAAGAAGGCTATCATTTGTAGACGCTTTTCTTCAGCTTGAATGCGTGAATTGTATCAAAGAGGTGATGAATTCCAAGGCGGGGCTCGACTACTTGATCGAGGACAAAAAGTTTGCTAGAAATCTAGTCACAGcGCTGGACACCAACAACACTATGATCAAAAAACAAGTATTTGAACTGCTGTCAGCGTTGTGTCTATACTCTGAGCAAGGATACCAACTAGCGATAGACGCTCTAGAAAACTACAAGATAACCAAGGGACAAAGATACAGATTTAGTTTAATTATTAACGAGCTGAAGAATGCCGAAGTTGTACCATACAGAACAGCGTGTCTTTCGTTCATTAATGTGATTCTTATTTCTACTGAAGACTTTGACCAGCGTGTACGATTACGTAACGAGTTTATAGGTCTTGGTTTACTTGACATTCTTACTGAATTTAGGCACGAAGAAGATCTTGATGACGATCTAGCTGTTCAACTGGATGTATTTGAAGAACGCAGACTTGATGACGACGATGAACAGTTATCACCAGAAGGAGTCGATTTAACAAGTCATATTGATGTTTTTCATGCTGTTTTTAAAAAGGTCAGTAGTAAACCACATTCCGCGAACCTACTCCATGTTCTTCAAAATCTATTGACCATTGATGGGGAATCACGTGTTGGTGATATGATGTGGGAGGTGATTGAAAAGCTGGTCAGACGTGCTGTCCATATCGAAAGTTCAACCCAAGCAGAATCAGTCGTCCAAGCTGGAGAAAAGGAACTCCACGCAGTGGAATCAGGAAATGAGGAAAAGAATTCGGAATCGAAAGAAAAGGAGGGTCAAATTGGAGAACAAGAAAAATCTAGTTTATGTAATGGTCTTCCTCCATCACCTGTAGAACAAGCACCTCTTTCTAgtgctcctcctcctcctcctcctccaccaccaccaccacttcTTGGAAATGCAGATGCCTTTACACCCGTAACTTTTCCTGGAATAGGTGctccacctccaccaccaccacctcctccTCCGCCTGGTGTACCTGGTGCACCACCTCCACCTCCCCTACCAGGCATGGCAGGTGTTCCTCCACCACCACCTCTTCCTGGAATGGGAGGtgctccaccaccaccaccacctccaccacctgGGGTACCAGGTGCTCCTCCACCACCGCCCTTACCAGGTATGGGCAGTGTGCCGCCACCTCCACCTTTACCAGGCATGGCAGGagtaccaccaccaccacctcttcCTGGAATGGCAGGtgtaccaccaccaccacctcttcCTGGAATGGCAGGTGtacctccaccaccacctctTCCTGGAATGGCTGGTGTACCTCCACCTCCACCCTTACCAGGCATGGGAGGTGCTCCACCGCCGCCACCACCTCCTCCTGGAATGGGAGGAGCcccaccaccacctccaccacctgGAGTTCCTGGTgttcctccaccaccaccaatgGGGTTAGTTGGTGCTCCCCCTCCACCACCAGGATTTACTGCAACCGATGGACGAGGAGGGTACAATAGATCCCAAAGTTGTCCAGTTCTACCCAGGTCCAGACCTAGTACGAAAATGAGAACCCTAGCCTGGCAAAAGTTACCACCTCACATCGTGCAACGGCAAAGTAATTCCGTATGGGCGAGAGTGATGTCGTTGGAAGAAATACAGCCAGACTTTAAAATGGAAGAAGAGTTATTTTGTCAGAAGAAAGCTGTTGtgaaaaaggaagagaagaaaaaagctCCAAAAGAGATTACCCTGCTGGACCCTAAACGAAGCTTGaatctaaatatttttttaaagcaGTTCAAAAAGCCAAACAACGAAATTGTAGACTTGATTCGTCAAGGTGATGTCGAAAAACTAGAACCCGATATCCTCAAGAGCTTCATAAAACTGTTACCGGACAATTCCGAGGTAGAGCTTTTAAAATCCTTTTCTGGGGATAGAACAAAGCTTGGCAATGCAGAGAAGTTCTTGATGGAGCTGACCTCTGTTATAAGATATGAACTCCGTTTAGAAGCAATGTTGGCAAAAGCAGAGCTAAAAATCAACCTGGATTCCATGAAACCAAACATTGCTTGTCTTCAATCAGCTATCAAGGAAATTTTGGAAAGCGAGATTTTACCAGAAGTCCTCCAACTCATTCTTATCATCGGAAATTTTATGAATTCAGGAGGCTACGCTGGCAACGCCACAGCATTCAAGATAACTTCACTTGTTAAACTTGTGGATACTAGAGCCAACAAACCTAGGATGAATCTGATGCATTTTCTTGTTCATGTGGcagaagaaaagagagaaaaagtcCTTCAGTTTCCCTCTCAAATGAAACACTTGGATCCAGCAGTAAGGTTGTCTCTCGATGCCCTCACAGCGGAAGTAGCAGCTCTTAGAAACAACATCACATCACTGAGCAAAAACCTTGATAATGCACCAAGTGATATCCAGGAACAATTTGGCGAGTTCGTCAAGGAGGCGTTAACAGAGGTAGAAGGACTAGAAGAAGGTATAAAGGAAATCAACAACTTAATACATAAGATGGCGGTGTATTTCTGCGaggatgaaaagaaaatcaagctTCAAGAAGTTCTGGGGTTGTTTAAAACATTCTGTGATCAGTTGACAACAGCTAAAAAGGAAAACGAACAATTTCGAATCCAAGAAAAGAAACGTCTAGAAAGAGAGCGTCGAAAGGCTGAAGAAGAAGCCAAAAGAAAGGCAAATCCTCACAAAGTCAAAGGCAAAATCCCTGAAAATCCACCTGATGATGGTGGCTGTATAGTAGACAGACTTTTAAACGAAATTCGTGGTGGTTTTCAATTGAAAAAGGTTAATAGTCCCTCCAGGTCGCCGTCGAGTAGGAGGAAGTCGTCTCAAGCGTTCTTTAAGAATACAACGACAGAAGGGAACGACAACAAACAGAACGAGACACCACTTGCACCCCAGGTAACCGAACCTGGTACCAATGTACAAGAGACTGGACCCGAACCTCACGTGCAACGAAAACTACTCTCTGTCCCCGAGATTATTTCTGAGGTTCACGAGGAAATTAGCGATGATATGGAGGAGCACAGGGTTCCCAACGAAGTAAGTAGTGAACTTGATAGAGACCAGAAAAAAACTGAGATCATTCCTGAGGTTCGCGAAGGAGCACTGgagaattcaaaacaaaacgatGATGTGCAGGAGCACAAAGTTCCCAACGAAGTAAGCAGAGAACTTGAAAAAGAGCAGAAAAACCCTGAGTTTATTTCTGCAGTTCGGGAAGAAACATTGGAAAATTCAGAGGAAAACGAGCTATCTGCCAATGATTTGAAGAAGGAGCACAGGGTTCCCAACCAAGTAAGCAGAGAACTTGAAAAAGAGCAGAAAACCCCTGAGATCATTTCTGCCGTTTGCGAAGAAACATTGGAGAATTTAGAGCAAAACGAGTTATCTGCCGATGATATGAAGGACCAAATAAGCAGCGAACgtgaaaaagagagtaaaatcgAAGATTTAAGAAATGAAGATATTGTGAATGAAGAAAAGGACGAAGCCCCTCTTTCTCCTCCAGTAGAAGAAAATCCAGTGCCAAACCAACAAAAGGTCGAGAATAAGTTTGTAAACCCTGAGGAAATACACAATAACCTGCATAGAATTGAAACCGATATTCCAATTGACGATGAGCCTGTACTAGAAGTGGAAGATGTGCGTGTTTTTGAACTCAATGAGATCAATGAAGCTATGCTGGACAAGACTGAACCTAATGAGGCTGCTACTCAGCAAGAATTGAGTGATGAAACTGTTGCTCAAAAACACGAACAGCCTATACTTGAAAATGGACTAGCACTAGAGAATGCAGATACTGCGGTGGTTGAAGTAAATGAGAAAATATTGGATAAAACTGATGAGGAAAACACCAAACGTGTCACGCAACAGCTAAATGAAGAAACCACTGCCCCGGATGAGCTCCTAAATACAGAACTCGATAATGGACTTGATAAAGATTCGTTAGAAAACGAATTCGAGTTCAGAAATGACAATTTAATTGCTGATGACACGAATGTTTCCACAAGATCCAATGACAATTCTTCTTCACCACATCCACAAAACAATAATTTCTCTCACAAAAATGAAGAGATGAGATCAATCAAACACTCACTAGAAAATGGTGTCCGAGATGAATCTATTGCCAGGGCTGCGTCGAATGGTAGTCTCCCTACAGGGGAACCCCCCTCTAATGGCAGTAAACCAGAGGTTGTAAAAGCACGATGGAGTTACCACGAGAGACCAACTACACCCACAGAGATCGTTGTAGTCGAAGAATTCAACGGAGCGCAGAAACAACAAGTTGAACTGGTCAATACGGACGCATGGAACGAAGAATCTCTCGAGGAACCAGTCAAAGAAGAGCACAGTAAACCCATAAAAGTGAAAAAGAGCAAGTCATTTGTGTTGAAAGGCTTCTCGCGATTTTTTCATGGCAGGAAAAAAGCAAAGGACGACGATAAAGGAGCCGAAACAGATGACACAAGCTTAAACAAATCACAGGAGAATGTTAAGACACCAAAGAGGAAGAGCTTTTTCTCGAGAAGAAAGACTAAAACttaa

Transcript

BRAKERFUXT00000040232

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06371 all species →	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan
PF06367 all species →	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan
PF06346 all species →	Drf_FH1	Formin Homology Region 1	Repeat	Interproscan
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR010473 all species →	Domain	Formin, GTPase-binding domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR027649 all species →	Family	Inverted formin-2	Interproscan
IPR003124 all species →	Domain	WH2 domain	Interproscan
IPR010472 all species →	Domain	Formin, FH3 domain	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46345 all species →	INVERTED FORMIN-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0016043 all species →	Biological Process	cellular component organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23958	INF2; inverted formin-2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000040232.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

3TPM > 0

6Conditions

0.2Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	1	0.04	0.11
Tentacles	3	0	0.00	0.00
Pedal disc	3	1	0.02	0.07
Body column	3	1	0.06	0.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.11
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.07
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.18
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.