Gene detail

Detailed information of BRAKERFUXP00000040977.1 in Telmatactis stephensoni

Genomic Location: 000081F_pilon_pilon:529074...540696
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000040977

ATGTCTTCTTCTCCTATTTGGGAAGTTTTAAGAAAGAAGAGACAAAATGAACGAAAACTTGACATGCACTCAAGAAAGGCAACCAAAGCCAATGGGACTGGCACTGCAACGCTGAAAAAGATCACATTTAAAAAAGGCAAAAGTGCTCGAGGAAAAGATGCAGCGAAGCTGTTTTCTGATTTGATTAATTCCTTTGAATCAGAACCAAGTGGAAGCAACGTAGATGGAAATCAAGTTGTAAATAATGAGCTTGGTTGTCAGCCTTTGCAAACAACTACAGGCACATCTGCATGTACCCCAACTTCTACGATAAGTTATGATAGGCAGCAGGTTAAAGTCAAGAGAAGGTCTCGCTCTACCTACAGAGGCATAAAAAAGAAATGCATCAAAAACCTGGACTCTGAGAAAGATGGATTTTGTGATGATCAGCTCAAAAGTTGTGACAACAAACTAAAAAGTCCAACAAATTTAAGCAGTACATGCAGTCAACACTTGTCTGATAGCTCAGCAGACTTTTGGGGTGATGATGAAATATTTGCTGATTTTAACATCAGTGATGTTGTCCATGCTTCCCTTGAAAATTCAACTAGAAAGAACATAAAGAATAACCTTGCTAGTACTCCAAAAATTGACATACATGTAGACTGTAGTACAAAATCTGAGCTTGATGATCaaatttttgctgattttgatatCTCTGAAGTTATTAAATCTTCACTTCAAAATTCAAGTTtaataaatgtaaaaaataatcAGGCCAGTACTCCTAGAGTTAACACAGCAGGACCTGTGGAAACTGCTTATGATTCATGGAATAATACATTTTATGGCTTACCTTTGGAAGTCAAAAGCATGTTTTCACAGTATCGTGGTATTGAAGAACTTTATGAGTGGCAGAAAGCTTGCCTTAATTTACCagcaataaaagaaagaaaaaatttgaTTTATTCTTTACCAACAAGTGGAGGAAAAACTCTTGTTTCTGAAATATTACTTCTGAGAGAACTAATTCTCAACCAAAAGGATGTTGTCTTTATTTTACCATTTGTGTCTATAGTACAAGAAAAAGTAAAAAACTTCACACAATTTGCTGTAGACCTTGATTTTATCATTGAGGAATATGCAGCTAGCAAAGGAAAGTTTCCACccagaaagagaagaaaaaagaaaactttataTGTTGCTACAATTGAAAaaGCTAATGGACTGGTAAATAGTTTTATTGAAGAATCAAGAATTGAGTCCCTTGGACTTGTAGTTGTAGATGAGCTCCATATGATAGGTGAAGGTGGACGACGAGGTGCTGTCCTTGAAATGTGCTTAACAAAACTCTTGTACACTGCTGGACATGTACAAATAGTTGGAATGAGTGCAACTTTGAGTAACATCAAAGATCTTCAGCAGTTTTTAAAGGCTGAGGTTTATACAAATGATTTTAGACCGGTCAAGTTACATGAATACATCATGGTAGACAACAAAATTCATGAAGTTCTTGGTAGTGATATCACTGAGCATCCAGTACGATGTATTCCAGTGTCGTCCAACAAGAAGAAGAGTCAAAAAGACCCAGATAACCTTGTGCTACTAGTGACAGAAGTCATTCCTCAGCACTCCTGCCTTGTTTTCTGCTCAACCAAACGAAATTGTGAAAATGTAGCCAAACTACTGATTTCATTTATGCCAAGGGATCTTTGTAAAATCAAGACAGATGAAAGAAAGGACCTTCTAAAGGCCCTGTTTAACCAGGCTCATGGGCTGTGCCCTATTCTTAAGTGTACTATTCCTTATGGTGTAGCCTATCACCATAGTGGGTTAACAGTAGATGAGAGAAAACTAATAGAAGACTCTTACAGTAAAGGAATATTATGTGTACTCACCTGTACATCGACACTTGCAGCAGGAGTGAATCTACCAGCAAAAAGGGTTATTTTACGTGCGCCATATGTTGGCAGTAATGTCATCAGTCGTAGTCAATACAAGCAAATGATTGGTCGTGCTGGACGAGCAGGCATTGATACATCAGGAGAAAGTATTTTAATTCTAAAAGAGAAAGATAAATATAAGGTGAGTAGTATTTTCAGTGGTCCCTACGATAGCTGTAAGAGCAGTCTACTTTATGAAGACAACAAAGGTGTTCGACTTTTGATTCTTAGTTTACTTGGATTAAAGCTTTGTATCACTCAAGCTCAACTGGTTTCTGCCATACAATCTACATTACTAGCCATACAAGCAGACGGCAGTTCATTTGCACAAGAATGCACTCTAAGCGCCATTGAAGCACTGGTTGAATTGGGTCATGTACAACAGAAATGTAAACAGAATGGCGATGTCGATATAAGTGTTACAAACTTAGGGCATGCTACTTATAAAGGATGCCTAGATGCAGACCTATCGCCACGTATGTACAGAAATATAGAATTGGCCTTAGATGGTTTAGTTCTTGGAAACGAGCTGCATCTTCTTTATGTTGTAACACCGCTGGATATGAGTATTCCTTGTGAGCCTGATTGGATGGTTTACCAGAAACAGGTAGCACTTttaaatgacaaagaaaagaaagcagcaAATGCAATTGGTAtatcagaaatatatctcctagggAAAGCGTACGGTCAAAAACTCGTAAAGtgcAATGATGAAAAATCCGTGAAGCGATTTTACTTAACTTTGATAATGTACAAGTTAGTGCAAGGGGAGTCTATATGGATGGTGGCAGACTTGTTTAAAGTCCCTAGAGGATTTGTACAGAACCTTTTAACGTCTGCGTCTTCGTTTGCGACGTGCCTTGTACATTTCACACAGGAGTTGAGCGAGTTCTGGGCTATCAAGCTCCTTCTTGAAGCCATTGTTAAGAGACTGACCTACACAGCAAGCTTGGAGCTGGTTCCACTTATGGAAATCTCAGGAGTTAAACAGGGACGTGCTCGTCAGCTGTTCAATGCTGGCTATCATTCCTTACGCGATGTTGCTAATGCCAACCCCAAGACATTAGTTAATGAAATCGAACACTTGTTTACATCACAAGCCAAACAGATCGTCTCAGCAGCAAAGATGTTACTGCAAGAAAAGGCAGATGCACTCCGTGAAGAAGCCGAAGAACTGATGTCATAG

Transcript

BRAKERFUXT00000040977

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002982 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21099 all species →	POLQ_helical	DNA_pol_Q helicase like region helical domain	Domain	Interproscan
PF20470 all species →	HTH_61	Helix-turn-helix domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan
IPR048960 all species →	Domain	POLQ-like, helical domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR046931 all species →	Domain	DNA polymerase theta-like, helix-turn-helix domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19178	HELQ; POLQ-like helicase	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000040977.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

23.4Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	15.18	21.17
Club-tips	3	3	16.94	23.36
Actinopharynx	3	3	9.06	12.34
Tentacles	3	3	14.07	14.38
Pedal disc	3	3	8.72	9.57
Body column	3	3	10.11	13.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	21.17
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	12.50
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	11.87
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	23.36
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	14.18
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	13.28
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	12.34
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	9.22
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	5.61
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	14.38
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	13.92
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	13.91
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	9.57
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	8.65
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	7.93
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	13.49
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	8.88
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	7.94

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.