Gene detail

Detailed information of BRAKERFUXP00000041345.1 in Telmatactis stephensoni

Genomic Location: 000079F_pilon_pilon:497730...506883
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001714 all species →	Family	Peptidase M24, methionine aminopeptidase	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR002468 all species →	Family	Peptidase M24A, methionine aminopeptidase, subfamily 2	Interproscan
IPR050247 all species →	Family	Methionine Aminopeptidase Type 2	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR018349 all species →	Binding_site	Peptidase M24A, methionine aminopeptidase, subfamily 2, binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45777 all species →	METHIONINE AMINOPEPTIDASE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0004177 all species →	Molecular Function	aminopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008235 all species →	Molecular Function	metalloexopeptidase activity	Interproscan
GO:0035551 all species →	Biological Process	obsolete protein initiator methionine removal involved in protein maturation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01265	map; methionyl aminopeptidase	EC:3.4.11.18	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000041345.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

201.1Max TPM

133.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	158.12	161.79
Club-tips	3	3	161.08	201.11
Actinopharynx	3	3	138.78	189.60
Tentacles	3	3	138.79	180.27
Pedal disc	3	3	114.65	138.48
Body column	3	3	92.09	105.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	161.79
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	158.24
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	154.33
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	201.11
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	162.06
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	120.08
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	189.60
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	144.14
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	82.59
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	180.27
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	131.57
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	104.51
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	138.48
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	121.78
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	83.68
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	105.12
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	97.06
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	74.10

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.