Gene detail

Detailed information of BRAKERFUXP00000041359.1 in Telmatactis stephensoni

Genomic Location: 000079F_pilon_pilon:609902...622737
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000041359

ATGGAAATAAGAAGCAGTGCCAACTACATCTGGAATCTACGCGATGTGCTCGGACAAGGCGCCACTGGAGCTGTCTACAAAGGACGCGAAAAAAAAACCGGCATTGAAGTTGCTATCAAAGCTACCAACCATCTTGGTATGATGCGGCCTCCAGAAGTTAGAAAGCGAGAGTTCGAAGTCCTGAATCGTTTGAATCACGAGAATATTGTACGGATTTACGCCTCCGAGAATGAGCTTCGAAGTCAAAATGAAATCATTGTTATGGAGTTATGCACTGGAGGAAGTCTCTACTCACTGCTGGAACATCCTTCCAATGCACTTGGCTTTTCTGAGGAAGACTGCAAAGATATCATAAAAGATGTTGTTGCTGGCATGGAGCACCTTAGGCAGCAAGGTATTGTACACAGGGATTTAAAACCAGGGAACATCATGCGGGTATTCAATGAAGACGGTACTTGCAGCTATAAGCTGACTGACTTTGGTGCTGCAAGAGAACTGGAACACTCAGCAGAACAATTTCTATCTGTTTATGGAACAGAGGAATATTTGCATCCAGATCTTTATGAGAGAGGAGTTCTGCGAAAATCCTCAGGGAAGACATTTGGTGCAAATGTTGACTTGTGGAGCATTGGGGTGACATTCTATCACATAGCTACTGGCAAACTTCCATTCCGACCTCATGGTGGACGTCAGAACAAAGACACGATGTATCACATTACAACAGCTAAGAGGTCTGGTGTTATCTCTGGAGTGCAAAAGACTGGTGGTGGAGGCATAGAATGGAGTGACAAACTACCTGAACATACTCAGCTGTCAAGagGATTTCAAGATCTCCTTACTCCAATCCTGGCTGGAGTTCTGGAATCAGATCCTTCAAAAATGATGTCATTCACTGGTTTCTTTAGACGAGTACAAGATATGGTGACAAGAAAGGTAGTGGAGGTGTTTTATGTTCAGTCAAATTCCTTTCACAGAATATACATTGAACCAAAAGCCAAGTTTGAAAAATTCCAAGATCTCTTAAAAGGAGAAACAAAGCTCTCACCAGATCAACAAAAGATCTACGTTAACGGAGAGCTGTTCAGGCCTCCAGATACATTTGAAGCAAGCATGTTCCCTTCTTCATCTAGAGAAAATCCTGTCATCCTGACTGGAGGTGACTTTATTCTTCACACTGCACTGACCGCAAGAAAGATTCCAAGCGTTGCTAAGCTACCAGAGGAATGGACCCTTGAGGCCGACGCTGCTGCAGCAAAGATTATGTCCAACTGTGCATATTCATGCAAGTTCTCAACAAAGTACTACACAGATGTTACTAATGCAATGTGTCTGGCAATGGGTGTTATTATTAAGTCACATAAAAGAGAGCTCCTTGAATTCTCTGCGGACATTGGTGACATTGAAGGCAGAAGGGTTGCAGCCAGTGAAATGACCAAAGTATGGTGCAACAGtcATGAACATACGTTATCTTTATTGGAAGATCTGATGGCTGATGTTCATCTTGATGAAAGAGACAAGCAGACTATTCAACAAGAACTCACAACAATCAAGAGgtctttactaaacaaactacAAAGCAACCAAGAGCTGGATAAAGTCAAGGATTTAACGAAAAACTTTAAAGTCCTGAAGCACAAAGTTGTAACCGATGATTCTTGGTCTCCTGCCTACTTTCATTTCAAGCAGAAAGTGTCAGAAAAGTCGCTGTATACACTGGTGTCCAATACCACAACGAAGATTGAAGAGATCTACAACAGATACAGAAAAGACAAACACGCGCGTCGTCTTGCGTACCCCGATGAACAAAACCACATTTACGATAGAAAGAGGTTGGCTATGCTGTCTGATAAAGTGGTACGTTCAACAAGAGAATGCTTCAGCCGACGAGTGTCGCTGTTTGAGGAGTTTACAAAACTGATCAGAGATGTTTATCGTGAAGAATACGAGGCTTATCGAGTAAAAACTCACCTAAAGGACATGGCGTCTGCAGATGAAGCGCATCTGACAACACTGGCAGCTTTCCAAAGAGATTGCCAGGAACGATACCAGAGAGTTTTGGTCATACTTAAACAATCCATGGTTACTTCACCATCACTGTCAGTAGGCACTGACATCCCGTCATTAAGTCTGCCTAGCAATGGAATCTCACAAGATGATGTACTGCTATCTGAAAACTTCTTCAGAGAAATGGAAAAACAgaTGACATCACTGTGCCATAGCGCTGATATGTCCAACCAAACAGCAAAAGACAACAGTGATCAACTGAGAGAACTGACAACCTCTTTCACTGCGTTTTACGAACTCCTCCATGAAAGTGGAACAAGAACGCTGAATGAGTTGCGAATATTGCACGAGAATTTATCAGCTGACAGTGGTACCACAGAAATCCCGGAAGAATAG

Transcript

BRAKERFUXT00000041359

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF18394 all species →	TBK1_CCD1	TANK-binding kinase 1 coiled-coil domain 1	Coiled-coil	Interproscan
PF18396 all species →	TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR041309 all species →	Domain	TANK-binding kinase 1, coiled-coil domain 1	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR041087 all species →	Domain	TANK binding kinase 1, ubiquitin-like domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051180 all species →	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969 all species →	IKB KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05410	TBK1; TANK-binding kinase 1	EC:2.7.11.10	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000041359.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

15TPM > 0

6Conditions

4.3Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	0.72	1.18
Club-tips	3	2	0.56	0.96
Actinopharynx	3	2	0.57	1.33
Tentacles	3	2	1.92	4.26
Pedal disc	3	3	0.64	1.69
Body column	3	3	1.34	3.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.18
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.53
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.45
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.96
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.72
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.33
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.38
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	4.26
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.50
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	1.69
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.13
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.09
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	3.52
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.32
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.18

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.