Gene detail

Detailed information of BRAKERFUXP00000041365.1 in Telmatactis stephensoni

Genomic Location: 000079F_pilon_pilon:161034...170760
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR033139 all species →	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10454 all species →	CASPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0043525 all species →	Biological Process	positive regulation of neuron apoptotic process	Interproscan
GO:0097153 all species →	Molecular Function	obsolete cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000041365.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000041365.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

12TPM > 0

6Conditions

4.2Max TPM

1.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.32	0.65
Club-tips	3	2	0.79	1.25
Actinopharynx	3	0	0.00	0.00
Tentacles	3	2	0.63	1.22
Pedal disc	3	3	3.02	4.25
Body column	3	3	2.53	4.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.65
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.29
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.25
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.13
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.22
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.66
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	4.25
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	3.23
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	1.58
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	4.15
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	2.71
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.73

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.