Gene detail

Detailed information of BRAKERFUXP00000041375.1 in Telmatactis stephensoni

Genomic Location: 000079F_pilon_pilon:74756...80483
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07522 all species →	DRMBL	DNA repair metallo-beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011084 all species →	Domain	DNA repair metallo-beta-lactamase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23240 all species →	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000041375.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000041375.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

62.1Max TPM

31.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	40.28	62.10
Club-tips	3	3	24.64	28.55
Actinopharynx	3	3	23.46	27.98
Tentacles	3	3	34.52	37.56
Pedal disc	3	3	38.10	42.84
Body column	3	3	25.63	31.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	62.10
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	30.20
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	28.54
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	28.55
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	22.71
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	22.66
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	27.98
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	27.57
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	14.85
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	37.56
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	33.45
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	32.53
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	42.84
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	36.15
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	35.31
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	31.23
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	23.71
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	21.94

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.