Gene detail

Detailed information of BRAKERFUXP00000042331.1 in Telmatactis stephensoni

Genomic Location: 000061F_pilon_pilon:983804...989247
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000042331

atggcggatccCATACGCTTTGATGGTCGTGTAGTTTTGGTAACTGGTGCAGGTGGCGGGCTCGGAAAGGAGTATGCTTTGGCCTTTGCAGAAAGAGGAGCTTCTGTTGTCGTGAATGACTTGGGAGGCAGCGCTATAGGTGAAGGAAAGAGCTCACGCGCCGCCGATTTGGTCGTGGATGAAATTCGATCCAAAGGGGGCAAAGCAGTGGCCGACTACAATTCTGTGGAAGACGGCGATAAAGTTGTACAAACAGCTCTCGATGCCTTTGGGAAGATCGATATCTTAATAAACAACGCTGGTATCCTTCGAGACAGGACGTTCGCGAGGATCAGTAATTTAGACTGGGACCTAGTTCATCGTGTCCATCTGCGCGGGTCTTTCCTTGTCACCAGAGCAGCATGGCCACAcatgaaaaagcaaaaatatggTCGCATTATCATGACTACCTCAACAAGCGGGATATTTGGTAATTTTGGCCAGGCCAACTATGCAGCAGCTAAGATGGGCCTCATAGGCCTCAGTAACACCCTTGTCTTGGAAGGTGCTAAGTACAATATTAAATGTAACACCATTGTACCCATTGCAGCATCAAGACTAACACAATCCATTATGCCATCTGAAACCTTTGAAGAGCTCAGTCCAAAGCACGTAGTGCCAATGGTGTTGTACCTCTGTAGTGATAGCTGTGATGAAAATGGTTCACTATTCCATAGTATGGCTGGATGGCACGCTAAGCTCAGGTGGCAACGAACCAAGGGAGCTATACTCCATCGTGAAGGTATAGAGGTCACCCCTGAGATGGTCCGTGACAGATGGGATGAAATCACTGACTGGACTAATGCAGATAATCCAACACCACAAGATAACCCAACCAAATCCATTGAGATCATAGAGGCCAAGAAAGCTGCTGGGGCCAAGGAACAAGATTCCAAGCCAATATCATTCACATACACAGAGAGAGATGTCATTCTCTATGCTTTAGGTGTTGGTGTGTCATTTCAGATTGATTACTCACATTTAACATTCCTATATGAAGGTCATGAGGATTTTAGTGTGTTGCCAACTTTTGGGGTGATTCCTGCTCAGAAAGGGATGTCACAGGTTTTCATATCTGGAAAAGTAGGAGAAATTGCTTATGACCCAACAAGACTTCTTCATGGGGAGCAGTATACAGAACTCTTTAAGCCATTTCCAACGTCTGGCACTGTGACATCTAAAGGTTCAATTGCTGATATTTTGGATAAAGGCAAAGGAGCATTAGCTCTGATTGATGTCACAACATATGATGAACAAGGAGAACCTATTTGTTTGAACCAGTCTGCTATTTATCTTGGTGGGTCTGGTGGATTTGGTGGCAAAAGAAACTCTGACAAAGCCAGGCCATTAGTGAAAGCTCCGTCAAGGAAACCTGATGTGGTGGTACAAGAGAAGACTGGTTTAACTCAAGCGGCTTTGTATCGTCTTAATGGTGATTACAATCCACTTCATGTTGATCCTGCATTTTCTCAAATGGGAGGTTTCTCTACTCCTATCCTCCATGGGCTATGCTCATATGGCATTGCTTGTCGTCATGTGCTCAAGCATTATGCTGGTAATGATGTCACAAAGTTTAAGGCCATGAAAGCTCGTTTCGCTAAACCTGTGATACCTGGACAAACTCTACAAACCAACATGTGGAGAGAAGGGAATCGAATTCATATTGAATGCAGAGTGATTGAGAATGGAAATGTTGTCTTAGCTGGTGGCTATGTTGATTTGAAGGGTGTGACAAGTAATGTGACGGATGTGAATGTTTCTCAGGATAAGCCAACATCGGAATTAAAATGTGAAGCTCTGTTTGCTGAAATGAAGAAGCGCATCTCAGGAAACCCTGCCCTTGTGAAGACTGTCAATGGGATCTTCCTGTGGAATATTACTAAAGATGGCAAGACAGCAGGGCAATGGATAGTTGACCTCAAGACAGGAAAACTCAATGCACAGCAGTTGTTCATGAAAGGAAAGCTTAAGGTGACTGGGAACATTATGCTGAGTATGAATCTAAAcaagctttttaaagaaaattcaaagatGTAA

Transcript

BRAKERFUXT00000042331

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF13452 all species →	MaoC_dehydrat_N	N-terminal half of MaoC dehydratase	Domain	Interproscan
PF01575 all species →	MaoC_dehydratas	MaoC like domain	Domain	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan
IPR051687 all species →	Family	Peroxisomal Beta-Oxidation Enzymes	Interproscan
IPR039569 all species →	Domain	N-terminal of MaoC-like dehydratase	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR002539 all species →	Domain	MaoC-like dehydratase domain	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR029069 all species →	Homologous_superfamily	HotDog domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45024 all species →	DEHYDROGENASES, SHORT CHAIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERFUXP00000042331.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12405	HSD17B4; (3R)-3-hydroxyacyl-CoA dehydrogenase / 3a,7a,12a-trihydroxy-5b-cholest-24-enoyl-CoA hydratase / enoyl-CoA hydratase 2	EC:1.1.1.- EC:4.2.1.107 EC:4.2.1.119	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.