Gene detail

Detailed information of BRAKERFUXP00000043371.1 in Telmatactis stephensoni

Genomic Location: 000057F_pilon_pilon:301918...304993
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08423 all species →	Rad51	Rad51	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016467 all species →	Family	DNA recombination and repair protein, RecA-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR047348 all species →	Domain	DNA repair protein XRCC3-like, C-terminal	Interproscan
IPR020588 all species →	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR013632 all species →	Domain	DNA recombination and repair protein Rad51-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46487 all species →	DNA REPAIR PROTEIN XRCC3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0000722 all species →	Biological Process	telomere maintenance via recombination	Interproscan
GO:0005657 all species →	Cellular Component	replication fork	Interproscan
GO:0033065 all species →	Cellular Component	Rad51C-XRCC3 complex	Interproscan
GO:0045003 all species →	Biological Process	double-strand break repair via synthesis-dependent strand annealing	Interproscan
GO:0071140 all species →	Biological Process	resolution of mitotic recombination intermediates	Interproscan
GO:0090656 all species →	Biological Process	t-circle formation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10880	XRCC3; DNA-repair protein XRCC3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000043371.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

7TPM > 0

6Conditions

0.2Max TPM

0.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	0	0.00	0.00
Club-tips	3	2	0.05	0.12
Actinopharynx	3	2	0.12	0.22
Tentacles	3	0	0.00	0.00
Pedal disc	3	2	0.08	0.19
Body column	3	1	0.07	0.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.12
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.04
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.22
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.13
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.19
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.04
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.22
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.