Gene detail

Detailed information of BRAKERFUXP00000044153.1 in Telmatactis stephensoni

Genomic Location: 000043F_pilon_pilon:365470...373982
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001431 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45688 all species →	ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008453 all species →	Molecular Function	alanine-glyoxylate transaminase activity	Interproscan
GO:0009436 all species →	Biological Process	glyoxylate catabolic process	Interproscan
GO:0019481 all species →	Biological Process	L-alanine catabolic process, by transamination	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00827	AGXT2; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase	EC:2.6.1.44 EC:2.6.1.40	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000044153.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

65.7Max TPM

30.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	41.39	65.74
Club-tips	3	3	27.91	36.94
Actinopharynx	3	3	21.37	31.08
Tentacles	3	3	33.49	40.56
Pedal disc	3	3	25.14	28.46
Body column	3	3	31.41	37.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	65.74
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	31.59
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	26.83
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	36.94
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	28.15
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	18.63
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	31.08
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	19.14
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	13.88
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	40.56
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	30.79
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	29.12
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	28.46
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	26.21
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	20.73
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	37.01
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	36.47
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	20.74

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.