Gene detail

Detailed information of BRAKERFUXP00000044585.1 in Telmatactis stephensoni

Genomic Location: 000044F_pilon_pilon:843048...854214
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000044585

ATGCTTCACAAAGCTGAAGAAGTGAAGGCAGAAGTCTTTCAGACTATATATGAAGAATATTCCTTTGGCGAATTTCAAGACTTGAACTCTTCTACTTGTAATCTTAATTGGAAAGTAGACAGTTTGCTCAATGACATTACCAACACATCCAAAAAGATTAgaGGTTCTGTTTACACTCAACTAGATGTTGCCGCAACTGAACATTCTCACCTGACTCAAGATTTAAGTGAAACAGAAGCAATTGGCAAAGTTCTCACTGAGCTTTGTAAAATTCATGGTTCTCTAGATGTATTCCCAACAGAAATGAATAATGAAGAATACTCTAAAGCTGCCTTGATTATTGATACTGTGAATGAAGATCTGTCTCATCTTCCCAAGGCTGGACAGgaaagtaaaatatatattgcGCTTAGGgAAGAAGTACGCAGACTCCATTCTCTGTTGATCAATAAACTAGAATCAGTATGGTTAAAAAGTGTATCATGGTCAACTCCTACTACAGCATCACTGGATAGTATTCATTCTCATCTCAAGACAAAATTGATTCTAAACACAGTTGGGTCTAAAATGGATAATGTCATCCATGCTATGCAGAGTCAAAATATCCTTGAAAAAAGAGTCAAGATTTTTGGAAAGAAGCTcatacagtttttctttagaccTTTAATTGTATTTCCAAGTTTAAAGCCATCAATTGAGAACAAGAAACAGGAAGTAGTCATCTCCATCATAAAGGACTCAACCAGAAGCAAAATTATTGAACCAGGCAAAGTGTATTGCAAGATTGTTGACATTCTAGAACAAATAAAAACCCAGTTTCATGATCATTCTGAAAATGTGGACAGTTCAGACAGTAATAAAAAGGatttcaagaaagaaaagaaaccagTACAACTTTTTTCATTATTAGGATCAATTATCTGGCCTATTTTATCAGAAGACATCATCAAGGAATGCTTAGCTAAATCAATCCCCAACACAAGTGCACAGcttgaaaaatatcaagaagtGATCACAAACACATTGGAATTTGAAGACAAACTGAAATCTATAGGATTTATCATGGAAAGTCCTTCATTACTCACTAAATATGTTAAAGATATCAGCATTCATTTTGGAAACAAGAAGTGTCAAGACTTGCTAGTGGCTGCACGAGATCTCATGAAGGATGATATACACAATACCATTGTCATTGACAAGTTCTCTGATACTGGCATGTTATGTAGTCTTGGAGAACTTGAAAAAGCTGTTAATGGAAGCAAAAAGGAACATAGTCAGACCATCAAAAATTCAACAGAAAAAGGACTCAAAGCTACTAAATCTTCTTCACAAAGTGCCATCCAACTGTTTTACACAGTTCGTAACATGTTTGAATTATTCTGTAATGTTGTACCAACATACCACCAAGAAAGCCTGGCAAGTCTTCCACAGCTGGCTGCTTTACACCATAATAACTGCATGTATATCTCTCACCTACTACTTACAATGGGTCATCAGTTTAAGTCTCAACTACCTGAACCTTTAAACCAAGGAGCTGCTACTTTTATTGATCTTGTACCTACTATCAGGAGTCTGGGAGAAAATTGTCTTCTGGAACAACTCAGAAGACAACGTTCTCAGCTGTTAGAGATTATTAAGAATGCTGAGGGGTTTGCTGATGCTCATGAAGACTACAGACAAAGTAAAATAGAACGTGCTGTAAAACAGGTACTCCATCAACTTCTTCATCTAAGGAAGATATGGTTGGGAGTTTTACCTGACAATCTATTTTACCAGTCACTTGGAGCATTGCTTGAGGCTGTTGTTGAAGATATCATTCACCAGGTTTTGCGTCTAGAGGACATTTCATCAGAAGAAGCAAAGTGCCTTCATTCAGTTCTATCCATCCTGGCAAACAGAGGACCTGAAATATTCCAAGACACcgaaaacaaccaatcagaaaactGCAATCCCAGTATGTATGTACCCCACTGGTCTAAGTATAAACAGACTATCAGTGCACTAGAGGCAAGTTTACAAGACTTAGCTGATGGATGGGGTGAAGGCCAAGGACCTCTAACTAATGATTTTACTGCTGATGAACTAAGAGGTTTGATAAGGGCATTATTTCAAAATACAGACAGAAGGGCTGCAGTCCTGTCAACAATTAAAGCATTGTAA

Transcript

BRAKERFUXT00000044585

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005373 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20665 all species →	Zw10_middle	Centromere/kinetochore protein zw10, middle domain	Repeat	Interproscan
PF06248 all species →	Zw10_N	Centromere/kinetochore Zw10 N-terminal	Repeat	Interproscan
PF20666 all species →	ZW10_C	Centromere/kinetochore protein zw10, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048344 all species →	Domain	Centromere/kinetochore protein zw10, middle domain	Interproscan
IPR009361 all species →	Domain	Centromere/kinetochore protein zw10, N-terminal	Interproscan
IPR046362 all species →	Homologous_superfamily	Zw10/DSL1, C-terminal	Interproscan
IPR048343 all species →	Domain	Centromere/kinetochore protein zw10, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12205 all species →	CENTROMERE/KINETOCHORE PROTEIN ZW10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000775 all species →	Cellular Component	chromosome, centromeric region	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:1990423 all species →	Cellular Component	RZZ complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11578	ZW10, DSL1; protein transport protein DSL1/ZW10	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000044585.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

65.1Max TPM

24.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	12.34	13.48
Club-tips	3	3	50.15	65.14
Actinopharynx	3	3	10.66	14.05
Tentacles	3	3	38.05	41.61
Pedal disc	3	3	18.82	23.71
Body column	3	3	16.43	19.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	13.48
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	12.52
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	11.02
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	65.14
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	46.70
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	38.59
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	14.05
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	10.56
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	7.37
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	41.61
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	40.25
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	32.30
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	23.71
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	17.63
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	15.13
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	19.75
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	16.44
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	13.09

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.