Gene detail

Detailed information of BRAKERFUXP00000044648.1 in Telmatactis stephensoni

Genomic Location: 000044F_pilon_pilon:931673...941974
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04494 all species →	TFIID_NTD2	WD40 associated region in TFIID subunit, NTD2 domain	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR037264 all species →	Homologous_superfamily	TFIID subunit TAF5, NTD2 domain superfamily	Interproscan
IPR007582 all species →	Domain	TFIID subunit TAF5, NTD2 domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19879 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03130	TAF5; transcription initiation factor TFIID subunit 5	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000044648.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

56.5Max TPM

26.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	25.42	30.26
Club-tips	3	3	39.02	56.51
Actinopharynx	3	3	19.14	32.55
Tentacles	3	3	33.29	33.98
Pedal disc	3	3	22.35	24.74
Body column	3	3	19.93	22.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	30.26
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	24.93
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	21.06
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	56.51
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	36.30
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	24.26
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	32.55
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	12.51
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	12.35
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	33.98
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	33.01
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	32.87
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	24.74
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	24.25
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	18.07
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	22.98
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	19.94
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	16.88

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.