Gene detail

Detailed information of BRAKERFUXP00000044663.1 in Telmatactis stephensoni

Genomic Location: 000044F_pilon_pilon:37772...50022
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18503 all species →	RPN6_C_helix	26S proteasome subunit RPN6 C-terminal helix domain	Domain	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF18055 all species →	RPN6_N	26S proteasome regulatory subunit RPN6 N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR040780 all species →	Domain	6S proteasome subunit Rpn6, C-terminal helix domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040773 all species →	Domain	26S proteasome regulatory subunit Rpn6, N-terminal	Interproscan
IPR050871 all species →	Family	26S Proteasome and COP9 Signalosome Components	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10678 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008541 all species →	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03036	PSMD11, RPN6; 26S proteasome regulatory subunit N6	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000044663.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

6TPM > 0

6Conditions

11.2Max TPM

1.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.90	1.74
Club-tips	3	0	0.00	0.00
Actinopharynx	3	3	7.25	11.20
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	1	0.19	0.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.74
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.97
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	11.20
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	5.88
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	4.66
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.57
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.00
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.