Gene detail

Detailed information of BRAKERFUXP00000045705.1 in Telmatactis stephensoni

Genomic Location: 000041F_pilon_pilon:649525...672150
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000045705

ATGATTCTCAATTATTTCACTCTAATTGTTCTAATACCTGCCATAAGCTGTGCTTATGTGCAAGGAGCAAGTGTGAGTAGAAAGAAGACGATTATATGGGGGCCAGGATTAAATAAAGATGCTGTGTTACCGGCGAGATATTTCTTCATCCAAACTGTCAACACCAAAGGACAAAAGGTGTGGGTACAACTATTAGACCGCCATGATGGCTCATTTATTGTACGATATCGGCTGTTTGCTGGTTACAAAgatttgaaaattgaagttctttacaaagaaaaacaggTAGCACAGTCTCCATTTCAATTTAAAGGTGGTGTGTACAATGAAGGATGTTATTGTCCAGAGAAAGACCCTGTCAAGTGGGAAAATGCAATGCAATGTCCTGATAACTACACCCAGATTAATAGTGATTTAGAAAGATTTCCAAAAATTAATCTAAAAAATCTTGCAAAAGAAGGAGTTGAAAGATTTGGTGTACACAATGCACTTTGCCATTATTCTGTCATTAATAATAAGGTTTACAGAAAGACTCATGGTGAACATGTTGGATTTTCAATGTTTATGGATAATATACTATTATCACTATCAAGAAAGGTCAGACTTCCAGATATGGAGTTCTTTGTAAATCTTGGTGACTGGCCTTTAGAGAGGCGACTCGCTAATCCTTTACCAATACTGTCTTGGTGTGGGTCAGAAGATACTGCAGACATTGTCATGCCAACATATGATTTGACAGAGGCAGCTCTTGAAACAATGGGAAGGGTATCCTTGGATATGTTGTCAGTACAAGCCAACACAGGACCTAAATGGAAAGACAAAACACCTAAAGCATTCTGGAGAGGCAGAGACAGTCGACAAGAAAGACTGGATCTAGTTGTAATGGGAAGGAAGAAACCTGAATTGTATGATGTTGCACTGAccaacttcttcttctttccttatGATGAGAAAAAGTATGGTCCAAAAATGCAGCATATatctttctttgatttcttcaagTGGAAATATCAAATTAACATTGATGGCACAGTTGCTGCATACAGATTTCCATATCTTATGGGTGGAGATTCTGTGGTTTTAAAACAAGACAGTGATTACTATGAACACTTCTACAAGGACCTCAAACCCTGGATCCACTATATTCCATTCAATAGAGACCTTAGTGATTTGGAACATAAGCTGAGATGGGCTATCAAACATGATGATGAGGCCCAGAAGATCGCGCAACAAGCGCAGCAATACGCACGTGAAAATCTCCAGTCCAGAGACGTTTTCTGTTACCACTGGGTTCTTTTCAGGGAATATGCCAAAAGGCAAACAACCAAACCAATTGTACACAAAGGAATGGAGCATATAAAGCAGCCCAGTGATAGTGATAGTCAATGTGAATGTTCTAGAATACGTAAGAACCTAGAAATCCAACAACTTCCTGACCTTGATCTACCATCAGACCTTCCAACTAGTGGTTCATCAGGACTTGCTGGTCATGGTAGTCAACCTGGACGTGGTACTCAGTCATCAGCCAGCCATGGAAGGACAATGTTAATAGGAAATCAAGTGATTGCATCACGTCAACAATCACAAAGAGACCAAAATGCTAGTATTACAATGCCTCTTACACAGACCACCAGTTCTGTACTTAATCCAGTGTTTCCTCAAGATGCAAGTGACATGATCAGTGACATTCGTCAAGAACTGGCACATTCCTCCACAACACGAGAAAATGCCAGAGAAGTTCAACCTTCTTTCCCTTTAGAAAACTTTGACATTCCCTCTATTAGACACCAAGCACCACATCCAGCATCAGGGTCACAGGTTTTAAATTACATGGCAGGACATAATGGTCGCATTGGTTCACAACATGTAGCAAGCACACCGCAGCTGAGTCATTCTATGACAAGGCATCATTCATTACACAATGGAATGCAGaattttaaccaatcagctttacctacaaatattTCTAATGTGCCAGTTAATGAGTCTTTAAACCCTTCTTTAGAGAATGCTGAGGAGGGGAATTCCTCTATTGATCAGTTAATTGAAGACATTGTTGACAGAGACATGCCCCAGGGTGTCGGAGATACAGTTGAGTTCTCTACACATGATGTAGAATTGAGTAGTCAGCAAATGCATCACGTCATGGCTCAAAGCAATCCCCATGGAAGTACTAGTATAACACCAAGTAATCCAATGGCTGCCATGCCTCGAAGTTCACCGTCTATGAGTACTGGTACTGGTAGCCCATTGGCTGGAAGTGGTCAAGTTTCAGGCAGTAATGCAATATCTGCAAACATAGCTCATGCACATAGTCCACTGTCACAGAATCCATCAAGTCCTATTGTGCCTGTAAAAGCACCAAGCCCACAGATGCAGCAGTTCAAGACGTCAGTCCCCATGAGAGGCTCTAGGGGTAATACCAAGAAGACAGTAACCATGGCAGCTCAACAACAACCGCATTCCCCTCAAGCAATGGGTGTGGCCCATAGCCCTAGACCAACACCTCAAAGAAGCCCCCAGCAGCCACCACCCCAAAGAAGTCCTCAACAGCCTAACAATGCCCAGAGTCCTCCTTCATCTGTCAATCCTATTATGTCTCAAAACATTTCCTCGCCATTATCACAGATGTCTCAGCTTCAATCGGGTGTGGTTCAAAATATGAATTCTCAGGTCATGGGGAGTATGAGTGTACAACACTCTCCTGTGGCGTCTCCCTTAAATATCCCCTCACCCCAGAATCAAAGAGCATCCCGACAAGTACCATCTCCAGCAGGATGTAATATTGGATCTCCTATTACACCAGGTGGACCACAAGACTTTTCTAAACCTCAAGGGATGAACCAAACATATATGACACAAGGAAATCAAGCAAAGGTTTCTGCTCAAAATGTTGGTAACATACAAAATCCTGGGAATTCAAGGGCACAGGGTAATATGACAAACTCTGTTAATACTGTTTTACAGTCACCTGCTACAACTGGTTTGCAGAATAATGGTGAAAATGTTTGGGGACAAAATCAATTCTCTTCATCTCAACAAAGATCAGTTAACAATATAACACAAGGAAGTATTGCTGGTCAGCAAGGAACTCCAACACAACAATCAGTTAGTGTAAATCCTCAAACAAACACGTCGACAACCCAACAAGCTAGTGTCAACACAGCTGGACAACCTGTATCTGCATTTGACACGGCTACAGTTCTCAGGGGGCTCACAGCACTGAAAGGTACTAATGTTATTCCTTTTCAACTGAAGCAAGGAACAAACCAACAGCTCCAGGCTATTAAGTTACCACAGAATGCAACTAACTTAGATATGCTGAAACAAGCTATGATTATGAAAGGCAGTGGAGGGCAGGGTGCAGCAAAACCCATGTCAATAACCACTTCCAAAGGACAAGTTTTTTATTATATTCTTCAAAAAGGAGCAAACATTAATACTACTAATAATCAAATGGTCAGTAATACTCAAGGACAGCAAGTTCAAATGGTTGTACTGAACACGAAAAATGTTACTAGTGGTAGTAATGTTGTTAAAACTGTAAATTCCACTGGGAGTGGAATAACTGTTCCTGGCAATCAAGTGCCTTCTTCAAATAACCCTTCAGGGAACAAAGCTGTTAACTCCACAAATGTATCGACTACTTCTCAATCCTCATATCTGACGGCACAACCTTTAGCTTCTACTCTTCAAAGTCCTATGCGGGCCATGAGTTCTGTTGTACAAGCTGTTGGGAATAATAGTAATTTAGTTTCTTCACCAAGTATTAGATCTCAAGTTAGTAGTACACAAGCAAGGTCTGCATCACAAATGCTTAGCCAACACAAGTTTGTTGGTATGCAGGCTGTATCAAATACTGGACAAAGTGTAATTTCTACACCATCAAATTATACACCAGTTCATAGTGTTGGGACAACACAAATAACTTTTGTAAATGAGACCACTTCTGTAAATCACTTGGTGTCGGCACCTGGTTTAAACCAATCAGCAAGTAGTATTATCTCAACACACCCTGTAACACCTACAATATCGACTACATCAACTAAGACAACACCAGCAACTACTTCGGTGACCCCTGTTTCATTAGGCGATAGTGACGACAGCGATACTCCTCTGGCACAGGTTGCTGAGACTCTTAGGAAAGCTAATAgtgaggagaagaagaaaaagaaaaagaagaaggcagagaaacgaaaaaagaaagaaaaggctgTTGGTGGGATTGAAAAacCTTTACCggcatttcaaatatttttcaagGAGACACAGGCAGCAATTAGACAACAAAATCCTACAATTGATTTTGATAATGTTACCAAGATAGTTAGCCAGATGTGGGAAAATCTACCTGAAGACCAGAAAAAAGTATATCATACCAAGcatgaaaaagctaaaaaagattatgaaaaagCATTAGAGAAACAAAAACAGGTATCTTCTCAGGAGCCAAGCCCCAAGATAAGAAAATTAGACACCACAACCACTCCATCTCCCATCTCATCTCCTAAAACTACTTCAGTTCCAACAGTTACATCAACAGTTACCAAGGACAACCACACAACTAAAGAACCTGTTAAACAGGAAAGCATAACACTTAAAATACCCAAAGCTATACTCAATAAACATGATACCACACCTACTAAAGCACCAAAAAGTGCAGCGTCTGGGACATCTAGTAAGGTTGCTGCAGCAGCAGGATCAGCTCCAGTTAAAGCTAAGAAATCCAAGGTATCAATCAATCCAATTAGTCAAAGGATATGCATTAGAGAAGGCTGCAATATGCCTGCAAGAACAACAAAAGAAAGAGGCACTCAATACTGCAGTAACGAATGTACTGTTGTACATTGCAGGAATGTTTTTCAAAGTTGggtatcaaaaagaaaagaggagGTCCAGGTGACATGA

Transcript

BRAKERFUXT00000045705

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05686 all species →	Glyco_transf_90	Glycosyl transferase family 90	Family	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR006598 all species →	Domain	Glycosyl transferase CAP10 domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR051091 all species →	Family	Protein O-Glucosyltransferase/Glycosyltransferase 90	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12203 all species →	KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0046527 all species →	Molecular Function	glucosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000045705.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000045705.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

16TPM > 0

6Conditions

19.5Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	9.15	19.50
Club-tips	3	3	0.58	0.83
Actinopharynx	3	2	0.11	0.22
Tentacles	3	3	1.05	1.53
Pedal disc	3	2	0.05	0.09
Body column	3	3	1.73	4.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	19.50
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	7.43
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.54
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.83
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.47
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.43
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.22
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.11
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.53
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.63
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.09
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.06
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	4.90
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.21
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.07

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.