Gene detail

Detailed information of BRAKERFUXP00000046321.1 in Telmatactis stephensoni

Genomic Location: 000035F_pilon_pilon:690936...716388
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000046321

ATGGACGAGGAAAAATATGGATGCCTTCATGAAATGTTTGTGGAACAAGCTCGTAAGACTCCTGAAGCAATTGCTGTCGTGTCAGACGACGGAAGAAGCTTGACCTTCAAAGAACTTGACGACGTCACCGATATTTTAGCTCTACATTTTCGCCATCGAGGTTGTACAAAAGACAAAGTTGTTGGAATATACCTTGAAAGGAGCTTGGAGTACCCAATCGCATATATAGCGGCCTTGAAAGCCGGGGGAGCATACTTGCCACTTGAGTTGTCATACCCGGAATCACTTCTTGATTCAATCTTGAAGGATTCGACCCCTGTCACCGTTGTGACAACAGAAGACTTAAGAGGCCGTATTCCATCAACCGTTCATGTCACAGTTTTAAACAAGGGCTGGCAGCAAAGACTTgagaaagaaaacgaaagtgTTGAGGCATTGCCACCATTAAAGTCCTCGTTGGACGATTTGGCATATATAGTCTATTCTTCTGGAACGACTGGAAAACCGAAAGGAATTGCCTGTCCTCATAGAGGAGCAGCTATATCATACAAATGGCGACTAGACAACTATCCATTTGAACCACAAGACAGAGTGGCATGTAATGTGTTTTTTGTGTGGGAAATGTTGCGCTCTCTTTTGGGTGGCATTCCACTCTATATTATTCCTGACAATGTGATATACGACCCTCCCTTGCTGTTAAATTTTCTACAAAAGCACAAAATAACCAGGATTTTATTCACACCTTCATTATTTGAGGCAATTCTTGACTATGATGAACTTGACACCAAAAGTTATCTCTCCACTCTGAAGGAAGTCTGGCTGTGTGGTGAAGTCGTGACTACAGCATTGCGTGACAGAGCTATGAAAACTCTTTCATGGATCCATCTACTTAACTTGTACAGTATATCTGAGTGTCATGATGTGGCTGTCTCTGATCTTACTAATATGCCTTTTCAAGAAGATTTGTCTGATAAAGATGAAAACAAGCGAAAATTTTGTCACGTGGGTAAATTGTTACCTAAAGTCCAAACTGTGATCATGGATGACGAGATGAAGCCATTACCTGTAGGTGTGCCAGGACAGATCTATGTCGGCGGTCAAACTCTGGCTCGTGGATATCTCAACAGACCACAACTCAACAAAGAACGATTCATTACTAGACCTGATAATGTTCCTGAAAACGCTGGTGACCGTCTGTATAAGACAGGTGATTGGGGGTACCTACTATCAAATGGTTCACTGGAGATTTGTGGAAGGTGTGATTCCATGGTCAAAATCAGAGGTTATAGTATTGAGGTCCAGGCAGTTGAAGCAGCTCTTTTACTGTTACCAATGGTTAACGCATGCTCTGTGCTGCCTCTGGGTGATGAAGGAACCGACAAATACCTTGTAGCCTACGTAGTGCCTGAAGGCAAGGTAACGAAGAAAGAAATCCGTGCCAATTTAAAAACGAGGTTACCATTTTACATGATACCTGCACATTTCGTGTTGTTACAAAGTATTCCCGTGGCTTCGTCTGGAAAACTAGACAAAAAGAAGCTACCTCCAATAGACTTTGACGACGCTGATGAAGAGGGCACGCCAAGCACAGCAACAGAAAAGGCCGTCGCTAGAGTATGGTGTGAGGTTTTATCGATACGAACTGTAGATGTACAAGAGAGTTTCTTTGACTTGGGCGGACATTCACTGCTTGCGACTCGTCTTTTGTCAAAACTCCGTGAAGAATTTTCCGTGGATTTAACCGTAAAAGAACTGTTTTTGTACCCAACTGTTCAAGACTTCTCCAATATAATAGACATGAAATGCGGAAAAAATGACGCAAAAATGTACAGGAGCCCGTCAATGGAGAGGAAAGTCGATCTTCATGAGGAGGTTGACCATCACAATCAGGGATTTGTTAACATGGATATGATACTACGAGCCTTCTGGAGATCTGGCAACTTTAGAAACACAAGGCGATGGAACCGTGGTCGTGTCTTGCTGACTGGAGCCACTGGGTTTCTTGGATGTTATTTGCTGAGAGATTTACTCAAGTTAACGAAGGTTCACATATTCTGCGTGGTTCGTGAAGTTCCAAATAAGAAATGCAAAGATCGACTCAGAGAAGTCCTACAGCAATACGGTATTCTACCCATCAAAGCCAACGGACAAGAACGCACTGAAGATGAACGATATCTAGAGTATGGATTTGAACACAGGGTGACCGCGATTGAAGGCGATATCTCGCTTCTCAACCTTGGTATGAGCGAAGAAGACTATATTTTCCTTTCGTCTGAGATTGACTTCATTATCCATGCGGCTGCTTCAGTCAACATGGTCTATCCATACACGGCTCTTCGTGGACACAATGTGGTTGGTACCGAAAACGTAATCATTTTTGCTAGTACAAGTAAAGTGaaacctttgcattttataaGCACCGACGCAGTTTTTCCTCACGGTTTGAAAGACTGTGCTGAGGACGCCGACATGTCGCACTACTCCCAGCAATTGGATGACGGTTACTCTAAGTCTAAATGGGTTGCTGAGCAGCTTGTATTACGAGCAAAGGAACGAGGTCTTCCCATGGTCATTTATAGACTTGGCAATTTGTCAGGTGAGCGAAAGAACGCTTTCTGGAATCCGATGGACTTTACTCTTTTAATGTTGAAGGCCTGTGCCGAGACTCTTTGTGCTCCACAAGTCGACTGGAGTCTAGAAATGACTCCTGTGGATTTCGTTAGTGAGATGATCGTCAAGATGACACAGgaCGTTTCTGAAACCATCGGAAAAATCTTTCACATCATCAACCCAAGACCACTTCAAGCGCAGTGGTTATATGAATGGATGACCTCGCACGGTTACCCACTGAAAGTGGTTCCTTTTGATGCATGGAAATTGAAagTTGAATACCTTAACAAAACAAGTGCATCTGAAGAACACAGCTTACTTGTTAGGTTGCTAGAGACCTGGATCAGGGACGGGTCGTTCTTCTCTAAGCTGAGTACCTACTCCCAGACAAACTTTGACCAAATCCTGAATCACTTTCAAGTCAGCTACCCACAGATCAACAGCGAACTCCTCACTACATATTTCACCTCGCTCGTCAAGCGAGCTGTTCTGCCGGCTCCGAGAAGAAAAATACGAGGTCCACTACCCCTTGAAGGCCAGGTTGCCATAGTAACAGGATCATCAAGTGGTATTGGTACAGCTGTTGCTAAGGAGTTGGCAGCTGCAGGAGCTAAGGTTGCTTTGGCAGCACGAAGAGAAGAAAGACTGAATCAACTTCGTAATGAGATTTTGTCCAGTGGAAATGTTGCCATTGTAGTTAAAACTGATGTCTCAAAAAGAGCTGAGGTACAAGAACTTGTTAAACACACTCAGAGTACTTTGGGTCCTGTGGATATCATTGTGAACTGTGCTGGTATAATGTTCTATCAAATGATGAAAAACTGTAACATGGATGACTGGGAAAAACAGATTGACATCAACTGCAAAGGGGTATTGAATGGAATAGGTGCAGTTCTTCCTGGTATGTTAGAACAAGGCAAAGGACATATTGTTAACATCTCATCAAATGCTGGAAGGAAGGCTTTTCCAGGACTGTCCGTTTATTCTGCTACAAAGTTCTTTGTCGAAGCGGTTTCGCAAGGGCTTCGTCAGGAAATCGCAGGAACAGGAGTAAAAGTCACGACTATTCAACCAGGTGATGTCACAACTGAGATTGGATTTAATTCACACGAAAAAGAGGCCGTAGAACAGTACGACATGTCAACCAAAACAAAGATTCTAGAACCACGTGACATCGCTAATGCTGTAGTTTATGCAGTAAGTCAGCCTCCTTACTGCGCTGTCAATGAAATCCTTGTTGAGCCCAGGGATGCACCGTGTTAA

Transcript

BRAKERFUXT00000046321

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002095 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF07993 all species →	NAD_binding_4	Male sterility protein	Family	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF00550 all species →	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR009081 all species →	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR020806 all species →	Domain	Polyketide synthase, phosphopantetheine-binding domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006162 all species →	PTM	Phosphopantetheine attachment site	Interproscan
IPR013120 all species →	Domain	Fatty acyl-coenzyme A reductase, NAD-binding domain	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR036736 all species →	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR010080 all species →	Domain	Thioester reductase-like domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44845 all species →	CARRIER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031177 all species →	Molecular Function	phosphopantetheine binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000046321.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000046321.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

143.8Max TPM

86.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	134.06	143.84
Club-tips	3	3	50.88	61.78
Actinopharynx	3	3	64.60	90.03
Tentacles	3	3	75.44	82.58
Pedal disc	3	3	101.33	105.13
Body column	3	3	94.22	108.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	143.84
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	130.24
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	128.12
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	61.78
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	57.37
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	33.50
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	90.03
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	59.78
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	43.98
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	82.58
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	75.76
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	68.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	105.13
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	103.98
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	94.87
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	108.64
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	87.91
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	86.10

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.