Gene detail

Detailed information of BRAKERFUXP00000046467.1 in Telmatactis stephensoni

Genomic Location: 000034F_pilon_pilon:620146...645663
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000046467

ATGACTTCCTCGAGTTTTGCTCCTAATGGACCTGAATTGGACGACTGTTGTTCGAATGCATTTGCTTTGACTGATCTTTGTGGGCTGAAGTGGCGCAAATATGTCCATGTCTGGAGCAAGGTTGTAGACCCCTCCCCCTCTGGGGATCCCATCTTGTCCTCCTTTTCATCTGCGCTAGAACAAGGAATACTTTGTGCCTGGAGAAATGTGCCTCATTCATCACCAAAAAGCAAAAGTGATGCAGTCAATGCTGGCAAGGAATTCTGGGTCTTCTGGTATGGTGACGACCCAAACTTTGGTGTTGTAGTATCATCTCAGCTAACAGAATCCAGTCATGGTTGCTGGGAGGATGGACTGACTCATGAACCAAGGTCATTGCTCTTCAAGGCACTGCATAATTTGTTGGAAAGATGTTTATTATCAAAGCAATTTGTAAGGTTGGGTCGTTGGTTTGTAAAACCAAAGGTCACTAGTGAAGTATCAACATTAAACAGCGACCACCTGTCATAttcgttttccttttttgtcCATGGTGAAAGTACAGTATGTACAACTGTTGAAATCCAGCAGGGACCCAAGGTACGGCATGTAGTCATAGATGACTTGGTGGTTGCTTCAACAAAGCCAGAAGGACTTCAAGTTGTTCTAAGTCCATTCGGTGAAAGTGGTGTCCTCACAGGCCAATCACATCACATTGATGATGACAAAACCAAAAAGCTGCTTGATGATTGGTCAAAGTTCTACCCATTGGACCCAGCTTCCAATTGGCTATCACCTGATTCTCAGGTTGTTGACAGGGAGGTACCTGCTATGGTTGTGGTTGTTAGTAATGATGAGGTTATGATGTATCCATCTGCTTATGTAATGGTAGTATGTAGTGATGATTATAAAGATGTGCTCACTTCAAACACTACTGCCTTACAATGCACAATCCCACCTTCTTCTGCCATCTCCCTAACACCACCAACATCACCAGTTGATCCAGCTGAGGGTTCAAAAGCACCAGTTTCAGCCAGGTTACCTCCATTGCTTCACCCATCAGCACAAGGCTCCTCACAGTGTGTTCTGCCTAAAACTGTGAACAATGACAAGAAGGAACTGACCAAGACTTTAGTGACGGACGTTTGGAAGGGCATAGTTTCTCCTAAACCTACAACCAGTAAATTGTCATCGTCTAAACTGGTACCAAGTTTTGTGAAGTCTGACCCTTCCCCACAACCATCCACTGGGGGTGAAGTCAGCTTGATTGGCCAGCCCTTGTGGGATTTTGAAGAGCCATTTAAGCGGATATCCTGTGCTTGTACATCAAGCAGTAACATCAGCAGACCCAAGCCAACACCTCAAGTTAGGACATCATTTGGAATCAGCAGACCTATCCCATCACCTAATCACCCTCTTCCATCAccccaacaacaacagcaacaacaacaacagcagcagacTCAAACTACCatgaaactgaaaaaagaaaagaaaaaagctgTCATCCCTTTTCATCATCGTCCACTTTTACAACAGGATACACCTGAATCGGCTTTAAAGTGTTATGTTGTCATGGCAACTAAAGGACTGCCTACTGTCAATACTTTGACCAATGATAGTAACAAACGTTACAGCGACTGTGCTGGTTCGTCTGTTAATACCAAGAAATACCCTGTTCCTGGACACAGTTCTTTTAGTAAACAAACTTCGAGTAGTGGTGCTTCTAAGGGAACTAGTAGTGGAAGTTCAACAActcaaattcaaataaaaactgAAGGGATTGTTTCTGGTTTATCTACCAAAAGTGGAACTATTTCTGAAACGAACAAAAGCAATGATTTAAGTAAAGTATCACTGGAGAGCTCAAAGTATAAAAACACTAAACCAACACAGAATAACATTTGTTACCTTCTGCCTGGAGAGTCTAGTTTTCTTGCTCCGTCTCTTCCTGGAAATTCTCTGGACTGTAGATTATTCCAGAAAAACCTTGCATCACCACCCCCTGTTCCTAGCGATACAAGCAAAATGGTAGTAAATGAAAGtgTAAAAAGACCCATGGATGTGGAAATAGAGGCTGCTTCACCACCAGCTAAAAGAAACAGAAGAGAGTCATCTGCTAAGTCTACAGGTCCCGGCAGACCACGGTCTGACAGTTCTACCTCTAGCAGCAGACCTCGTGGTCGAAGGAACAGCTCATTGCAGTCACCAACAGTACTTGTACCACCTAGTTCTTTCCCTGTCAAGATTGAAGACAATGACATGGATGTGTCTATGCCAGCACTAAAGTCTCCCACTCAAGCACGTGTCTCCAGACAGAGAAGAAGAAGTAGCAACAGCAGTGTCGCTAGTCCTTCAATTCCTTCCCCAGCACCAGTAGAGCCGCAAAAACTAAGCAGACCTCGGCAGAGAAGACAGAGTGTTCGGAAACTTCcacagcagcaacagcaacaacaaccgCCAGAAGAGAAAGAGGTCAAAGAACAGGAATTGAATTTGTTCAATTCTCATGACAATCCCATGCAAAAAATTATTCCTTCACCACCTACGCCTCGTCAAAATATCCCACTCAGTAATTTGATGACTGATAAAGACTTGATGGTGACTCCAAGTGATCTTGATCAgctttttgatgatgatgatgatgacgacgacgatgatgctTTTAACAGAACAAGTGGCACTGATGCAAACTGTGGTTTCAATTCTGGCCAAGGTTTTTCTGGTAAACCTACTGACGCTTACAACTCAAGTCAGATAACTACAAACTCTGGAGTGGTAGCATCTCAAGATCTTGCGAGAATGTTTCCAACTCCTCCTTCGTTGGAACCAGTTGCGCATTCTCCACCCTGCTCTACAGGAAGTGATTATATTAGTCCAGGAAGTGTCAAAACAATGCCTTGTGGTATTGCAACTTCACCTGAAACTCATCCCATGGGAGTATCAATGCTGTTGGATGGAGATCATGATGGCATCCTAAGCCCAAAGGAGCTTGGATCTGTGTTTGAAATCCCAACATTTGAAGAATACTCTATGTCATCAAGATTTGGGCCAGTGGAAGGTCTTCCAAGCCAAAAGAAATACCCACTAAAGCTTCCAGAAAATCTGTATTACAAACCTCGTGGTCAGGGCTCTCAAAGTACAGACTCCCATGGAGAAATGCCACAGAAGGACGAGTGTGCTGTCGATATCGATAGTCTAGATGTGACCACCGCTGTAGTCCCCTCACCAGTCATTGGAAGTTGCCATGGCGACATACCAAGCATCGGACAAGGTCTTTTTCCTGAAGatgaaatgaataaaacaaCCTCCAGTAAGGACAAAGTTAATAGTAAAACAACATCTGGAGCGATTGTGGAGTTGAAACGAGAAAAGCCAACAACGCCAACAAGTGATCCCATGTTTAGTACATTGGTGGAAATTGTTATTGACCAATGTTCTTCGCCTTTCTCGTGCTCAACGGTAAATCAACAGATAACAACAGAACAGCAAGATAATGCACTCGAAACTGTACCAACAACTAAAGCTGTTGCAGCTTTGCATGGTCTACGGCAAATTCTCCAGGAAGCTCTACACAAATCTACTAGTCGCAAGACATGGGAACAGCCTAATGGTACAATGGTTCAGGGCCCTCTCTCGTGGAAACAGTTTCATCAGTTAGCTGTCAAAGGTGGAGAGGAAACACCCCAAGCTCAACCCATTCCATCTATGCTTGTCGGGAACGGGGGAGACTGGATATCACTAGCACCGTTTTCGTTCCTGTTCTGGGAAAAGCTGTTGTTGGAGCCATTTTCTTCCAAGCAAGACATCGCATACGTTGTGGTTGCTCCAGAGAACGACCCTGTTCTTACAAGTACAAAATTGTTCTTTAAAGAACTCAGCTCTTTGTACGAGACTTGTCGTTTGGGCCAACACGTACCAATAGCCAAGATCATCAGAGATGGCATTTTACGAGTGGGGCAGAAATCACTGAAACTTTGCAAGGAGAGCGTAGACGAATGGTTCTCACAGCAGAGTAATACGAGTGAAGGAGCTAGAATCAAGCTGTATGCTCAAGTCTGCAAATACCATCTTGCGCCGTACCTTTCCACTCTCAAAATCGACCGTCATCTATTGGATCGAGATAAAACGGACGAGAAGACCAAGTCTGACAGTGAAAGGTCTGGTTTTCCCTACTCAGGAAATGATGGAAGCAAGACAGGAACTATTGGTACCCCGACATCTGACACCGTAGGAACGCCGTCAGGAGACGACGAAGGCGAAAGCGTTAGTGATGAACCTCCAACGATTGTTGTATATCTTGTTGACCCGTTTGTTACCAGTGGTTCGACTGGAGGGACTGGTTCGTATGTTGGTCTACTGAGGTGCTTTTCTGAAATGATTCAAGGATTGACTGATGGGGTTAAGAACAACATTGTACTTCAGGTGGTTCCTCTGACTCAAGTTCTCCAAGTCGACAATCTGACCAAGTCCAAAGAGGCATCCCTGAGTTTCATAATGCAGCTTAAATGTCTGGCGTTCTCTGTCTTTTCACGATGTCGAAAGACAATCCATCTAAACACAAACGTCAAGTCCCTCACAGGGTTTGGTCCCGCTGCGGGACAAGAAGCCACCGTCAAAGACAAAGAGGGTGATATCATCTCTTTGAAGCTCTACTCGTGTCCATATATACTTTGTTCTCCGAGTAATCCAGTCAACGAGATCAACGAAAACGGAGTCGACAAAATGGTCCCAGCTTGTCAATCCACTCTAGTGTTGCACTGTGGGTATTGTCTGTCACGTGACCAGCGATGGCTGCTGACCGTTTGTACCGACAGCACCGGCGAAAAGATCGAAACGACCGCGATAAGCGTACAGCCTTATTTACGAGAGGACGGTCGACCGCACAAGACCTCTTCTAGAGCCAAAGCTCTTGCGAAAGTGTGGGAATTTTGTGTTGGGGTCATTGCCTCTAGTTTGTCATCGTGGAGACTTGTCATTTGTAAGCTTGGACGAATGGGTCGTGGCGAGATTAAAGATTGGAAAGAGATCTTGAGTAAAACGTCAACTGAGAACCGTGAGTCCTGCAATGCTTGCACGTCTCTACGCAGTGATTTACGTCCTTCCATATTAGGAGCGACATTACTGGCCCTTGAACCTGAGCCTGCTGTCAGACTGTACATGGCAAAAGGTCTAACCAAAACCAGCAGTCCACTAGATGCAAGCCATCAAATTCCAGAACCTACAAAACAGCCTGACAACAAAACAGCACCGGCATCGGAAACCACTCCAGAGACTGTCATCACTGACACAGATATTTTACTCGCTGGAGCCGATGATGATGAAAACGATGGTGATCCCTTGCGTCATCTTTTCGGGCCGTTGTTAAATACATCACCGACTTCTCTCTCCCCATCGGGTGTCCTGCTTGGTTCACCTATGGAAGAAAACCACTTACCTTCGTCATCTTCGCCGCTCGCTTTGTTACCAAATTTGCCCACGCAGCCAGTTACCTCTCCGTTTCAACCCATCGGGAGGGCATCCCCTTTTCAACCTGTCAGTCAGCCTGTCCCTTCGCCGTCTAAGAGTTTGACCCCACAGACGGTTCGTGGAAGGCCAGAGGACGAGTCTCCGATCATTCAACCCTTAGCACAGGGCTATGTTATTTCGACAATTCATCCAGGAAAACTACCGAGAAGTTTCTGGGTGAATTATCCACATGCAGAGAAATCGTATCCTGTGGTGTTAAGGGCATCAATGTTTGTACATAATCCCGATCTGGTTGAGCTTGCCAATGGATTTTTTATTCCAAGTCACGATCTGCGCTCATCTGCGCACTGTGATGTCTTAAAATACATTTTGCAACAATTTGACGCTCTTTCATGGTTAAATATCGACCCTATGTCACGTGATAGACGGTCCTGTCTACCAGTCCACCTCTGTATGGTTTCACAACTCACCGAAGCATTCACCCAATTTATAGAAAAGAACTGA

Transcript

BRAKERFUXT00000046467

Protein

BRAKERFUXP00000046467.1

MTSSSFAPNGPELDDCCSNAFALTDLCGLKWRKYVHVWSKVVDPSPSGDPILSSFSSALEQGILCAWRNVPHSSPKSKSDAVNAGKEFWVFWYGDDPNFGVVVSSQLTESSHGCWEDGLTHEPRSLLFKALHNLLERCLLSKQFVRLGRWFVKPKVTSEVSTLNSDHLSYSFSFFVHGESTVCTTVEIQQGPKVRHVVIDDLVVASTKPEGLQVVLSPFGESGVLTGQSHHIDDDKTKKLLDDWSKFYPLDPASNWLSPDSQVVDREVPAMVVVVSNDEVMMYPSAYVMVVCSDDYKDVLTSNTTALQCTIPPSSAISLTPPTSPVDPAEGSKAPVSARLPPLLHPSAQGSSQCVLPKTVNNDKKELTKTLVTDVWKGIVSPKPTTSKLSSSKLVPSFVKSDPSPQPSTGGEVSLIGQPLWDFEEPFKRISCACTSSSNISRPKPTPQVRTSFGISRPIPSPNHPLPSPQQQQQQQQQQQTQTTMKLKKEKKKAVIPFHHRPLLQQDTPESALKCYVVMATKGLPTVNTLTNDSNKRYSDCAGSSVNTKKYPVPGHSSFSKQTSSSGASKGTSSGSSTTQIQIKTEGIVSGLSTKSGTISETNKSNDLSKVSLESSKYKNTKPTQNNICYLLPGESSFLAPSLPGNSLDCRLFQKNLASPPPVPSDTSKMVVNESVKRPMDVEIEAASPPAKRNRRESSAKSTGPGRPRSDSSTSSSRPRGRRNSSLQSPTVLVPPSSFPVKIEDNDMDVSMPALKSPTQARVSRQRRRSSNSSVASPSIPSPAPVEPQKLSRPRQRRQSVRKLPQQQQQQQPPEEKEVKEQELNLFNSHDNPMQKIIPSPPTPRQNIPLSNLMTDKDLMVTPSDLDQLFDDDDDDDDDDAFNRTSGTDANCGFNSGQGFSGKPTDAYNSSQITTNSGVVASQDLARMFPTPPSLEPVAHSPPCSTGSDYISPGSVKTMPCGIATSPETHPMGVSMLLDGDHDGILSPKELGSVFEIPTFEEYSMSSRFGPVEGLPSQKKYPLKLPENLYYKPRGQGSQSTDSHGEMPQKDECAVDIDSLDVTTAVVPSPVIGSCHGDIPSIGQGLFPEDEMNKTTSSKDKVNSKTTSGAIVELKREKPTTPTSDPMFSTLVEIVIDQCSSPFSCSTVNQQITTEQQDNALETVPTTKAVAALHGLRQILQEALHKSTSRKTWEQPNGTMVQGPLSWKQFHQLAVKGGEETPQAQPIPSMLVGNGGDWISLAPFSFLFWEKLLLEPFSSKQDIAYVVVAPENDPVLTSTKLFFKELSSLYETCRLGQHVPIAKIIRDGILRVGQKSLKLCKESVDEWFSQQSNTSEGARIKLYAQVCKYHLAPYLSTLKIDRHLLDRDKTDEKTKSDSERSGFPYSGNDGSKTGTIGTPTSDTVGTPSGDDEGESVSDEPPTIVVYLVDPFVTSGSTGGTGSYVGLLRCFSEMIQGLTDGVKNNIVLQVVPLTQVLQVDNLTKSKEASLSFIMQLKCLAFSVFSRCRKTIHLNTNVKSLTGFGPAAGQEATVKDKEGDIISLKLYSCPYILCSPSNPVNEINENGVDKMVPACQSTLVLHCGYCLSRDQRWLLTVCTDSTGEKIETTAISVQPYLREDGRPHKTSSRAKALAKVWEFCVGVIASSLSSWRLVICKLGRMGRGEIKDWKEILSKTSTENRESCNACTSLRSDLRPSILGATLLALEPEPAVRLYMAKGLTKTSSPLDASHQIPEPTKQPDNKTAPASETTPETVITDTDILLAGADDDENDGDPLRHLFGPLLNTSPTSLSPSGVLLGSPMEENHLPSSSSPLALLPNLPTQPVTSPFQPIGRASPFQPVSQPVPSPSKSLTPQTVRGRPEDESPIIQPLAQGYVISTIHPGKLPRSFWVNYPHAEKSYPVVLRASMFVHNPDLVELANGFFIPSHDLRSSAHCDVLKYILQQFDALSWLNIDPMSRDRRSCLPVHLCMVSQLTEAFTQFIEKN

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18296 all species →	MID_MedPIWI	MID domain of medPIWI	Domain	Interproscan
PF06333 all species →	Med13_C	Mediator complex subunit 13 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051139 all species →	Family	Mediator complex subunit 13	Interproscan
IPR041285 all species →	Domain	MID domain of medPIWI	Interproscan
IPR009401 all species →	Domain	Mediator complex subunit Med13, C-terminal	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48249 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15164	MED13; mediator of RNA polymerase II transcription subunit 13	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.