Gene detail

Detailed information of BRAKERFUXP00000046712.1 in Telmatactis stephensoni

Genomic Location: 000030F_pilon_pilon:253486...275092
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000046712

ATGTCGAAGCGAAGTGTAGAGTCGGTGAAGAAAGAGCCTTTCTCATctaaaaaggctcgaaaatccATAGTGAACACAAGTTTTAACGTAGGAAAACCACCTTCCACGAAAGGCTTCGTTGATGGATCAATTGTTAGGGTGAAAATGAAGAATTTTGTTACATATGATGAATGTGAATTCACTCCTGGACCACATTTGAACGTTCTTGTAGGACCAAATGGAACTGGAAAGTCAACAGTTGTGTGTGCTCTGTGTCTTGGTCTTGCTGGTCAAACAAGATTACTTGGAAGAGCAAGTGAAGTTGGAGAATTTGTCAAGCATGGTCGAACTCAGGCTCTTACTGAAGTTGAACTttttaattCATGTGGACCAAATTATGTGATAACTAGAGAAATCTTTAGAGAAGGCAACAGATCAACATGGAAGCTTAATGGAAAACCTTCAACCATGCGAGAGGTACAAGACGTGACAAGCAAGTTGAATGTTCAGATAAGCAACTTATGTCAGTTCTTGCCACAGGATAAAGTAGTTGAGTTTGCTAAAATGTCACCTCAGGAACTTCTAAAAGCCACAGAGACAGCAGTTGGACCCCCTGGAATGATTGATAATCACCAAAAGCTCATTGACCTTAGAAAAGTTGAGAAAGAACTGGAGTTATCACTGAAAGAAAAGACTGACCACTTGGACAAACTAAAAGAACAGAATCAGCAACTTGAACATGAAGTGCGCAGATATCAAGAAAGAGAAAGACATTTAGAGAAAGTACAAATCCTTGAGAAGAAAAGACCATGGGCTGAATATGAGCAAACTAGGGTTCAGTTTGTGGCCTCCAAGCAGGAAAGAAATGAGGCTAAAATAAAACTGGAAACGACAAGAAAACAGAATGCCCCAATGGCCAACAAGCTAAGTAAAGTTGATAATGACCTCAAAGAACTTGAAGCGGATATCAAGCAACAAAATGAACATGGAAATGAGGTATTAAAAAAGACCAAAGCAAAAAGTGATCATTTGGAAAAGCTTATGGATCAGGTTGAAGAGCACTTGAATCAATTAAAAGAccttaaagaaaatgaaaaacgaaGGGAGAAAAAAATCAATGAACTTGAAAGACAGATTCAAGGAATTCAGAGAGAACTGGAAAGTCTTCCAGATCCAAATGAACTACAGCCCCAAATTGATGAGATCACTACTCAAGCTCGTCAGATAAGTAGAGAACTATCAGGCATCCAGCAAGAAGGCAACAGAATCTTGGATGAGAGAAGACATTTGACTGCCCAAACACAAGATGTGACCAGCAGACTAAACAGGCTTGAAGACATGAAGAAGCTGAGATTAGAGTTAATTCATAAACAGTACAAAGATACTTATGATGCCGTGATGTGGCttagagaaaatcaaaacagATTCAGTCATACTGTACATGAACCAATTCTTTTACAGGTTAACATGCATGATGTCAATAATGCCAAGTTTCTGGAAAAACTGATCAGTAGTAATGATATGAGAGCTTTTGTATTTGAAAGTAGAGAtgacatgaaaatattttttgatgagGTTCGTGACAGACAGCACCTCAAGGTCAATGGTGTAACCCCACCAGATGAACCGTTGTCAAGTTTCAAACCATCCCGCAAACTTGAAGACTTAAAGAAATGGGGATTCCATTGTTACCTGAATGAGATGTTCACAGCACCTGATGCAGTCATGAAGTATTTGTGTGAAGCCTATAGAGTACATGAAATACCATTAGGCACTGATTACACTGCTAGGAATGCTGAAACTGTTATTAATGAGTCTGGCCTCACCCATTTCTACACCCCTACATCTAGGTATTTGGtaagaaggtcgaaatatggaAATAGAGAGAGGTCAACTCTTGTTGATCATATAAgAGAAGCAAGATACTTCAATAATTCAGTAGACTTAGAGGAAAAACGACGTTTGGAGGCCGAGCGAGAGGGAATTCAAATGCAACTTCACTCCATCAATGAAACATATGGGCAACTCAAAGATAAAGAGACTGCACTGAATAAAAAACTTGAAGAACTGAGAAACAGCAAGAAAAATCTGTCATCTCAGCTTCAAAGACGAAGAACTCTTGGGAATCAGCTGGAAAACAAACAGAAATTGCTAGAAACTTCCCAGAATGAAGCACCAAACATCAAGCAGCAAGAAGCCAAAATAcagaaagaaattgataaaaCAAATGCCAAAAGAGTAGCTGCCCTTACACAGTTCAAAGATTTTATCAAGGAATGTGTAAATATTTGCAAAGAGAAAGTAACAACCAGCCTACAGCATGCCAGACTATCTGCAGAGAAAACAAGAATCACAAACCAATTTAGAGAAGCACAAGAACAAGTTAAAAGAGCAGAGGATGAATTTGAACAAGCACAGAGAAATTTTGAGTTAATGAAAAACAAAGCTAAAAGTTTAAGACAAATAGCACACCAGAAAACAGGGATTCCTCAGGGAGAAGATGTCCCAGCCAGTTTAAAGGAGACAAGACAACAAGAAATCAATGATCTCAAGGAAAGGTGGCTCACCCCTCTTGAGGATCTAATAAGTAAAATCAATACAAAGTATGGACACTTCTTTAGGATGATGGGATGTGCTGGAGAAGTCTCTTTGGCAAAAGATCCGGTTGGGAATGAATATGATAAATATGGTATTCAAATAAAGGTCAAATTCAGGGCCAAGGATTCTCTTCATGTCCTAAACCCACATCATCAAAGTGGTGGAGAACGCAGCGTATCTACCATGCTTTACCTCATGGCCATACAAGAAATGACAAACTGTCCCTTTAGAGTAGTAGATGAAATCAACCAGgGAATGGACCCAAATAATGAACGTCGAGTATTTGAACTTGTAGTGCAAACAGCTTGCAAAGAGAACACATCTCAGTACTTCCTTATTACTCCTAAGCTCTTGCCAGACTTGTGTTATACTGAAAAGATGACAATCTTGTGTGTGTTCAATGGTCACTGGATGTTACCACATACTAAGTGGAACCTCAAGGAGTTTATCAAGCGAAAGAGACTTCAATCTGCCGCTGCTTGA

Transcript

BRAKERFUXT00000046712

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR027131 all species →	Family	Structural maintenance of chromosomes protein 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45916 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22803	SMC5; structural maintenance of chromosomes protein 5	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.