Detailed information of BRAKERFUXP00000047195.1 in Telmatactis stephensoni

Genomic Location: 000025F_pilon_pilon:359061...371995
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002401 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00199
all species →
CatalaseCatalaseDomainInterproscan
PF06628
all species →
Catalase-relCatalase-related immune-responsiveFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018028
all species →
FamilyCatalase, mono-functional, haem-containingInterproscan
IPR011614
all species →
DomainCatalase core domainInterproscan
IPR040333
all species →
FamilyCatalase, clade 3Interproscan
IPR010582
all species →
DomainCatalase immune-responsive domainInterproscan
IPR002226
all species →
Binding_siteCatalase haem-binding siteInterproscan
IPR024708
all species →
Active_siteCatalase active siteInterproscan
IPR020835
all species →
Homologous_superfamilyCatalase superfamilyInterproscan
IPR024711
all species →
FamilyCatalase, mono-functional, haem-containing, clades 1 and 3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11465
all species →
CATALASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004096
all species →
Molecular Functioncatalase activityInterproscan
GO:0006979
all species →
Biological Processresponse to oxidative stressInterproscan
GO:0020037
all species →
Molecular Functionheme bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →
Cellular ComponentmitochondrionInterproscan
GO:0005777
all species →
Cellular ComponentperoxisomeInterproscan
GO:0042542
all species →
Biological Processresponse to hydrogen peroxideInterproscan
GO:0042744
all species →
Biological Processhydrogen peroxide catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03781katE, CAT, catB, srpA; catalaseEC:1.11.1.6
Pathways of neurodegeneration - multiple diseasesko05022deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000047195.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples
17TPM > 0
6Conditions
12.9Max TPM
3.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Mesentery 3 3 6.35 12.87
Club-tips 3 2 1.70 2.88
Actinopharynx 3 3 2.62 4.92
Tentacles 3 3 2.90 3.44
Pedal disc 3 3 2.65 3.66
Body column 3 3 2.81 4.61

Per sample · hover a bar for the full sample record

Show the sample table (18 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR14511804 Mesentery Mesentery not recorded not recorded SRP319504 12.87
SRR14511801 Mesentery Mesentery not recorded not recorded SRP319504 4.05
SRR14511800 Mesentery Mesentery not recorded not recorded SRP319504 2.14
SRR14511802 Club-tips Club-tips not recorded not recorded SRP319504 2.88
SRR14511811 Club-tips Club-tips not recorded not recorded SRP319504 2.23
SRR14511803 Club-tips Club-tips not recorded not recorded SRP319504 0.00
SRR14511805 Actinopharynx Actinopharynx not recorded not recorded SRP319504 4.92
SRR14511807 Actinopharynx Actinopharynx not recorded not recorded SRP319504 1.48
SRR14511806 Actinopharynx Actinopharynx not recorded not recorded SRP319504 1.46
SRR14511809 Tentacles Tentacles not recorded not recorded SRP319504 3.44
SRR14511808 Tentacles Tentacles not recorded not recorded SRP319504 2.93
SRR14511810 Tentacles Tentacles not recorded not recorded SRP319504 2.32
SRR14511813 Pedal disc Pedal disc not recorded not recorded SRP319504 3.66
SRR14511814 Pedal disc Pedal disc not recorded not recorded SRP319504 2.15
SRR14511812 Pedal disc Pedal disc not recorded not recorded SRP319504 2.14
SRR14511817 Body column Body column not recorded not recorded SRP319504 4.61
SRR14511816 Body column Body column not recorded not recorded SRP319504 2.86
SRR14511815 Body column Body column not recorded not recorded SRP319504 0.97

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Telmatactis stephensoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated16BRAKERFUXP00000035404.10.969234839667708
Negatively correlated3BRAKERFUXP00000032516.1-0.820597976292683

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Telmatactis stephensoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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