Gene detail

Detailed information of BRAKERFUXP00000047321.1 in Telmatactis stephensoni

Genomic Location: 000026F_pilon_pilon:485277...492223
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000047321

ATGTCAAATCAAATTAGCTCTCTGAATTATGATGACTCAACATCTGCAGGAAGAAAAATTGTGCAACTGATACAAGCATTGGAAGAGgtGCAAGAATTTCACCAGCTTGAGAGTAATCTACAAGTACGACAATTCCTTCTTGAAACTCGAACATTTCTCCATCAAATGATAAGAACAATCAACATCAAAGAAGAGGTTTTGATAACCATTCAGTTAGTAGCTGATCTTTCCTATGCTTGGACCATCATTGATAGTTACTCAGGTTTTATGCAGCAGGGAATCAAAGTCAATCCATCACTGGTTCAAAAACTTAGAGCAACATTTCTTAAGATGGCATCAGGAATGGACCTTCCATTGGTTCGCATTAGTCAGGCCAACAGTCCAGATCTTGTTAGTGTATCTCAGTACTACTCTGGTGAACTAGTGGCTTATGTTCGCAAGGTTCTTCAGATTATCCCAGAGACCATGTTCGGCTTGCTTGATTCAATCATAAGATTACAAACACACAGTATTAAGGAGGTACCTACAAGACTGGAGAAAGATAAACTACGAGAGTATGCACAGTTTGATGAGAGATACCAGATTGCTAAGCTGACACATGCCATCTCAGTCTTCACAGAAGGGATTTTGATGatgaaaacaactctagttGGTATCATTAAGGTGGATCCTAAACAGCTTCTAGAGGATGGGATCAGGAAAGAGTTGGTCAAACAAGTTGCTTATGCTTTACATCAGGGTTTAATATTTAACCCTAGAGCCAAGGGAAGTGAGCTTTCTGTTAGACTGCGTGAGCTTGGTGGAAAGATGGATGGCTTTCGTCGATCATTTGAGTACATCCAAGACTATATCAACATTTATGGTCTGAAGATTTGGCAAGAAGAAATCTCACGAATTATCAATTATAATGTAGAGCAAGAATGTAACAGCTTTCTTAGGGAGCAGGTTCTTGACTGGCAATCAATCTACCAATCAACAACTATCCCCATTCCTAAGTTTCCACGTGTGGATGAGTCTGTAAATTTCATTGGAAGACTGGCGCGAGAAATCCTCAGGATCACTGACACAAAGGTGACGTGTTACATTGATCAGATGGGTGCCTGGTATGATACTAAAACCAAACAAGAAGTCATGAATCTGTTGATCTTACGGCAGTTACAGCAGAGTGTTGGCACATTTGGTTTGACAGGCCTTGATAAACTACTGTCGTTTATGATCGTCAAAGAACTGCAGAAATTTGTTATTCTCCTTCAAAGTGCCTTGAAAGACAAAGTCATTGTGGACACTTTGACAAGTTTGTCTAAGAGCCTAACACCAGTCAAGAGTTTAGTAGCGAGTCCATACAGAATATTTCAAGCAGCTACTCAAAGGACTGCTAAACTCTGGCCACAGTACACAGAGATTATTATGAAGGTTGGTCAGATGCAACTAATAAGACGACAGATTTCAAATGAACTAAACTGTGCTGCTAAATTTGACTCTAAAATTCTAGAAAACGCCTTGCAGACTTTTAACAAGTCTATTTTGAGGGACATCGAGGCTCATTATCAAGACCCAACCCTTCCCTACCCAAAGGAAGACAATCCCTTGATGTTTGAAATGACGTCGTATCTTGAATGGGCTGGTATTCACAACCCTCTAACTAAGATTTACGTCACAACCAAGAAGTATCCATTCTTTGCGTTAATCAACTTCCTGTGCGTCATTTCTCAAATTCCCAAGCTTGTCTACGTCAAGAGTGTTGGTACCATGGTGGCACGTAAACCTACAGACCAAATAGACTGTGCACCTTTTGTTGTTGGAATGATTACTGTGTTGAAACAGTTCCATTCTGAGTTTACAGAGCAGTTCTTCGCGTGTAGTGGGCAGTATGTCCGCTCTCTTGTAGAAGCAGCAGCCACAAACGCACGAACAAGCGATCTTCCCCCTGAAGTTGTAAACATGTTAATTTTTATGGAAGATTACTTATCCTACAGTGAACTACAAAGAAAAGCAGTGGAGGCGCATATTCCATCTTACATCTTTGATCAATTCCGCCAGAATGCTAATTAA

Transcript

BRAKERFUXT00000047321

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10266 all species →	Strumpellin	Hereditary spastic paraplegia protein strumpellin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019393 all species →	Family	WASH complex, subunit strumpellin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15691 all species →	WASH COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0051125 all species →	Biological Process	regulation of actin nucleation	Interproscan
GO:0071203 all species →	Cellular Component	WASH complex	Interproscan
GO:0140285 all species →	Biological Process	endosome fission	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18464	RTSC, SPG8; WASH complex subunit strumpellin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000047321.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

85.5Max TPM

22.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	4.20	7.46
Club-tips	3	3	62.24	85.45
Actinopharynx	3	3	7.40	8.69
Tentacles	3	3	39.08	48.57
Pedal disc	3	3	13.41	26.02
Body column	3	3	6.71	8.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	7.46
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	3.12
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	2.02
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	85.45
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	51.15
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	50.10
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	8.69
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	7.66
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	5.87
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	48.57
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	48.24
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	20.44
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	26.02
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	7.81
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	6.40
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	8.27
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	6.43
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	5.41

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.