Gene detail

Detailed information of BRAKERFUXP00000047351.1 in Telmatactis stephensoni

Genomic Location: 000026F_pilon_pilon:297290...299606
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008716 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03874 all species →	RNA_pol_Rpb4	RNA polymerase Rpb4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038324 all species →	Homologous_superfamily	Rpb4/RPC9 superfamily	Interproscan
IPR005574 all species →	Family	RNA polymerase subunit Rpb4/RPC9	Interproscan
IPR010997 all species →	Homologous_superfamily	HRDC-like superfamily	Interproscan
IPR006590 all species →	Domain	RNA polymerase Rpb4/RPC9, core	Interproscan
IPR038846 all species →	Family	DNA-directed RNA polymerase III subunit RPC9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15561 all species →	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0030880 all species →	Cellular Component	RNA polymerase complex	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25304	RPC9, CRCP; DNA-directed RNA polymerase III subunit RPC9	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000047351.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

10TPM > 0

6Conditions

1.8Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	0.94	1.60
Club-tips	3	2	0.48	0.88
Actinopharynx	3	2	1.16	1.75
Tentacles	3	1	0.32	0.96
Pedal disc	3	0	0.00	0.00
Body column	3	3	0.60	1.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.60
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	1.23
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.88
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.56
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.75
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.72
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.96
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	1.22
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	0.39
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.18

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.