Genomic Location: 000024F_pilon_pilon:686306...689340
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000047656 |
| Transcript |
| BRAKERFUXT00000047656 |
| Protein |
| BRAKERFUXP00000047656.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008729 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13705 all species → | TRC8_N | TRC8 N-terminal domain | Domain | Interproscan |
| PF13923 all species → | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025754 all species → | Domain | TRC8-like, N-terminal domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR011016 all species → | Domain | Zinc finger, RING-CH-type | Interproscan |
| IPR050731 all species → | Family | HRD1 family E3 ubiquitin-protein ligases | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22763 all species → | RING ZINC FINGER PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0012505 all species → | Cellular Component | endomembrane system | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23789 | RNF145; E3 ubiquitin-protein ligase RNF145 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of BRAKERFUXP00000047656.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
