Gene detail

Detailed information of BRAKERFUXP00000048060.1 in Telmatactis stephensoni

Genomic Location: 000021F_pilon_pilon:1373126...1381053
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000048060

ATGAAGCTTACTACACCAGAAATCTCTTGGCATAGCAAAAAGCCTGTTTTAAGCGTAGATTTTTGTAAAATTGGTCCAACAATGAAGTTCGCTTCAGCGGGAGCAGATAATGACGTAAAGATCTGGTCTGTAGTTTTTAACGAAGATGGAGTCGCTAAAGTTGAGTTTTTGGCAAACCTTTCAAGACACAATAAAGCAGTGAATGTTGTCCGTTTCTCACCGAATGAGGAGATGTTGGCAACTGCAGGGGATGATTCTTTTGTTATATTATGGAAATTGAATCAAGACCAGTGTCCACAACCCTTGAAAGACagtgatgatgatattgaaaaTAGAGAATCATGGACATCAAGTAAAGTACTCAGAGGACACATTGAAGATATCTATGATCTAGCCTGGTCACCTGATGGATCACAACTCATCTCTGGATCTGTGGATAACAGTGCTATTATCTGGGATATTGCAAAAGGAGCAAAGCTGATGATTCTTAAGGACCATAAACATTATGTACAGGGTGTTTGTTGGGATCCTCTTGGGCAGTATGTAGTAACTAATTCAAGTGACAGGAGTTGTAGGCTTTACAGTCCACAGTCATACCGCTGCTGCTACAACATCAACAAACTGTCTGGAACAGCTAACATTAAAATCCCAGAGGGAGGAGAGCTCAAGCAACTGAAGATGTTTCATGACGAAACCATGTTGTCATTCTTCCGGAGACCAACTTTTACTCCTGATGGATCTCTTCTTATCGTACCAGCTGGTAGAATTGAGATGTCCAACCAAGTTTTGAATACTACCTATGTATTTACAAGAGGCTCTCCTAATAAGCCAGTGCTTTACCTACCAAACCCCAAGAAAGCTACAGTTGCTGTTCGATGTTGTCCAGTGCTGTTTAATCTAAAGACAAAAGACAAAGAAAGCGTTAAAGAAAATGATCAAGATAATGTGCCATCACTATTCCAGATTCCTTACCGCATGGTTTTTGCAGTTGCCTCCCTTAATTCTGTTGTACTCTATGACACACAACACACTGTACCATTTGGTTATATATCAAATATACATTACTCAGGAATCAGTGACATTACTTGGTCTAATGATGGTTCAGTATTAATTGTATCATCAACGGATGGGTACTGTTCCTTAGTTAAGTTCTACGAAGGTGAACTTGGAACTCCTTACAAGATGACAGTGAAAGAGGTGTTGGATAAGCCATTACCGATTAACACACCAGCTAGTAACAGTACTAATATACCAAACAATGTTGTAGAGACTCCAGATAATACAGGTAAACCTTCCAAAAAGATTGTCCTCACTCCAGTTCAGAAAATGGAGGTTGAAGAGGAGCCAGTTAAACCTGATAATGAGACAGTTGTCAAAAAGAAAGCACCACTAATTGAAAAGTTTGCTGTGCCAGTCTCACAACTTCCACCGTCAAACACACCCTCAAAAACTACCAATAAGATAACACCAAGACGAGTGCAGTTGGTGACTGCAACAAAACCCTGTGATACCTCGCCACAAACCACTTTGAAACAAGCACCTGGTCTGACAGCAGTACAAAATGCTTTTAAACCAGTTCAAACTATGGACATAGATCCAATATGTGTAATGAAACCAGAACAAATTCAGGCTGGTTTAATCTCAGGGTTGATAGATAATAAAGCACCACCAGCTCAAGCTACTAGAAATGACATAAAGAGTGCACCTATACAGAGTACACAGCCAAAAGAAGAATCCAGTCATGGAAACCATGGAAACCAGACAACTGAACAGAAAACTTCTAATGCTGGAGTGAGTCAACCAAGAAGAGTACCACTTGTGTCGATGCCCATCAAGCAAACAGTTGGAACATCACAAGTTAATTCCAAAATTGAATCACAGAATGAACCAAGACGAGTGCCGCTGGTGACTGTTCAGACAGCAGTTCAGCCACCAGTTACAACATTACCACCTCAGGTTATGCCAAGTTCTACCTTGAAAAGTCAACCAATAGAGACTAAAGCACCTAATACAGGTGTATCACCTAATTCTTCAAAGTTAAGAAATCCAATTCCTTTAGAACCAGTAGTTATTGTCCTGGAATAA

Transcript

BRAKERFUXT00000048060

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001632 all species →	Domain	G-protein, beta subunit	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR045145 all species →	Family	Chromatin assembly factor 1 subunit Cac2/CHAF1B/FAS2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15271 all species →	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0006335 all species →	Biological Process	DNA replication-dependent chromatin assembly	Interproscan
GO:0033186 all species →	Cellular Component	CAF-1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10751	CHAF1B; chromatin assembly factor 1 subunit B	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000048060.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

16TPM > 0

6Conditions

12.4Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	2	2.75	5.08
Club-tips	3	3	5.43	10.80
Actinopharynx	3	2	4.34	12.37
Tentacles	3	3	5.96	9.30
Pedal disc	3	3	4.01	6.60
Body column	3	3	2.57	2.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	5.08
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	3.18
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	10.80
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	3.05
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	2.45
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	12.37
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.64
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.00
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	9.30
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	5.95
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	2.63
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	6.60
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	3.41
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.03
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	2.69
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	2.58
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	2.43

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.