Gene detail

Detailed information of BRAKERFUXP00000048331.1 in Telmatactis stephensoni

Genomic Location: 000020F_pilon_pilon:1501917...1507132
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14913 all species →	DPCD	DPCD protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026224 all species →	Family	Protein DPCD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31921 all species →	PROTEIN DPCD	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERFUXP00000048331.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20800	DPCD; protein DPCD	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000048331.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

63.6Max TPM

46.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	33.48	41.89
Club-tips	3	3	52.73	55.15
Actinopharynx	3	3	40.80	47.86
Tentacles	3	3	60.86	63.61
Pedal disc	3	3	45.08	47.96
Body column	3	3	44.80	55.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	41.89
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	31.68
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	26.86
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	55.15
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	52.44
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	50.59
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	47.86
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	40.39
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	34.14
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	63.61
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	61.83
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	57.15
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	47.96
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	46.15
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	41.14
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	55.36
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	41.70
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	37.33

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.