Genomic Location: 000018F_pilon_pilon:2693...44156
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000048635 |
| Transcript |
| BRAKERFUXT00000048635 |
| Protein |
| BRAKERFUXP00000048635.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001651 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17865 all species → | AAA_lid_5 | Midasin AAA lid domain | Domain | Interproscan |
| PF17867 all species → | AAA_lid_7 | Midasin AAA lid domain | Domain | Interproscan |
| PF07728 all species → | AAA_5 | AAA domain (dynein-related subfamily) | Domain | Interproscan |
| PF21108 all species → | MDN1_4th | Midasin AAA+ ATPase lid domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR012099 all species → | Family | Midasin | Interproscan |
| IPR041190 all species → | Domain | Midasin AAA lid domain 5 | Interproscan |
| IPR040848 all species → | Domain | Midasin, AAA lid domain 7 | Interproscan |
| IPR011704 all species → | Domain | ATPase, dynein-related, AAA domain | Interproscan |
| IPR048617 all species → | Domain | Midasin, lid domain 4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48103 all species → | MIDASIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0000055 all species → | Biological Process | ribosomal large subunit export from nucleus | Interproscan |
| GO:0030687 all species → | Cellular Component | preribosome, large subunit precursor | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14572 | MDN1, REA1; midasin | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of BRAKERFUXP00000048635.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 1 | 0.99 | 2.98 | |
| Club-tips | 3 | 3 | 2.01 | 2.65 | |
| Actinopharynx | 3 | 3 | 2.29 | 3.46 | |
| Tentacles | 3 | 3 | 2.15 | 2.97 | |
| Pedal disc | 3 | 3 | 1.68 | 1.91 | |
| Body column | 3 | 3 | 1.25 | 1.43 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR14511801 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 2.98 |
| SRR14511800 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511804 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511803 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 2.65 |
| SRR14511811 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 2.29 |
| SRR14511802 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 1.09 |
| SRR14511807 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 3.46 |
| SRR14511806 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 1.76 |
| SRR14511805 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 1.66 |
| SRR14511810 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 2.97 |
| SRR14511809 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 2.17 |
| SRR14511808 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 1.32 |
| SRR14511814 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.91 |
| SRR14511813 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.59 |
| SRR14511812 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 1.54 |
| SRR14511817 | Body column | Body column | not recorded | not recorded | SRP319504 | 1.43 |
| SRR14511816 | Body column | Body column | not recorded | not recorded | SRP319504 | 1.35 |
| SRR14511815 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.98 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Telmatactis stephensoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 101 | BRAKERFUXP00000023006.1 | -0.795753103525236 |
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Telmatactis stephensoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | ready | open → |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |