Gene detail

Detailed information of BRAKERFUXP00000048869.1 in Telmatactis stephensoni

Genomic Location: 000015F_pilon_pilon:223494...225920
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002260 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03083 all species →	MtN3_slv	Sugar efflux transporter for intercellular exchange	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047664 all species →	Family	Sugar transporter SWEET	Interproscan
IPR004316 all species →	Repeat	Sugar transporter SWEET repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10791 all species →	RAG1-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008643 all species →	Biological Process	carbohydrate transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0051119 all species →	Molecular Function	sugar transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15382	SLC50A, SWEET; solute carrier family 50 (sugar transporter)	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000048869.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

18TPM > 0

6Conditions

49.9Max TPM

19.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	3	30.56	49.94
Club-tips	3	3	21.59	27.54
Actinopharynx	3	3	19.30	23.37
Tentacles	3	3	21.75	25.83
Pedal disc	3	3	12.26	14.72
Body column	3	3	14.00	16.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	49.94
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	21.14
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	20.61
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	27.54
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	23.52
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	13.70
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	23.37
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	19.82
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	14.72
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	25.83
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	19.93
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	19.50
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	14.72
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	11.42
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	10.63
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	16.95
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	14.25
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	10.80

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.