Gene detail

Detailed information of BRAKERFUXP00000049698.1 in Telmatactis stephensoni

Genomic Location: 000011F_pilon_pilon:636694...643931
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000049698

atGAAAATCACAGTGTGTTTTAACTCAGTTCGGGTGATTGTTCCGTGTGGAAATGGCGAGCTGTCCATCCAAGAGTTGACCCATCGAGCAGTAGCTCGCTACAAAAAAGCTACGAATAAGCATCCAGAGGATTTTGTACGAGTTCAAGTATTGGAGACGATTGAAGAAAGGGCAATTCTCGACCCAGATGATGTTGTAGGAGACGTTTTGGACGATAAGGACAAGGTTGTAGCAATCTTTGAGGAGCAGTCTACAGTTAACTCTCCACCAAACAACATTGGAGATGGAATGAGCACATCATCAGTGGGCACGGCAAGCCCAGACATTTTCCAATCTGAACACACAAATGAAGACACTAAAACTAGTCCAATGCTtattaaagatgaaaatcacAACAACACTGCTCCTTCTAAGTTAATAGTTGTGTCATCACATATCAATGAAAAATTGCCACCACCTCCTGTGGCCCCTAAGCCAAAAGGTTACAAAAAGAAAGAACCTCCTGTACCAATAGACAGTGTACCTTCAGAGGATTCAGGGATTTGTGTGAACACTTGGAATCGTGTCGGATCAGACTCCTCAAAGTCAGAAGTTAGTGAAACGTTATCAACACCTAGAGTTATCCGAACTGCTGAAACTGCTTTTGTCGCTATTGGAACACCAGTTTTAGTAGATAAACAATTCAACTTTAATGGAATAAAtaacgaaaacaagaaaaatatggAATCTCAAAATGACtttgaagaagatgatgatgatgatgatggaacTTTTTCTCTTGGAAGAAATTCTGCAAGACAGTCTAGTATGTTTCTGGATAATCCAGTGTTGGACCGATGGGCTGAGTTACAAGAGCAAAAAGTACTTGAAAACCAAGGAAAGAGTGAAATCGTTGCTGGTGAAAGAGAGGAACCTGCTGGGGCTTCTCTGTCCCCCACAGAGGAAAGAACATTTGAAAGCAACGTGTTTGAACATGATGAAAAGGATGGTTTGTCAAATGGCTCAATCTGTAGTGGAGAATCAGATGACATGTTTACTATCAATTTAAATCCAAGTACACCTGGTGACCTGGGTTTTAAAGTCACTGGTTATAAGACTGCAGATGGAAGGGAGGTTGGTCTTATTGTAAAAGAGATTTCTGCAGATGGCTGTGCAGCAAAAGATGAAAGACTACAGGTTGCTGATAGAATAGTGGAAATCAAtgacaataatttattagaTCTATCAAATGAAAGGGCAGAAGAAATCTTTTCTCAGGAAAGTCAGTCACCATTTGTTAAACTTGTTGTATCTGGTGCCCATTCATTTATACATGAAAAAAGCCAGAATGAACCTGAACAAGACCATTTGCAAGTTACAGAACCAATTGAAATACCAGAAACCTCTCAGCAACAAAATTCAATTTCTCCTGAACTAAATGGTATCGAACCTCCTCCAGGCTTCAGAGATACACTGAACAGAAAATcACTTCCTAATGGACCACAACTGTCTACAAATGTAAAAACGATCAATAAAAGATTCCTTATTGAACTGAACAAAGGCTCAGATGGACTTGGATTCAGCATAACAACCAGAGATAATCCTGCAGGAGGACACACAccaatttttgttaaaaacatcCTAGCCAAAGGTGCAGCTATTGAAGATGGTCAGTTGCAAAGTGGCGACCAAATTGTGGAGGTCAATGGTACTGAGATGTCTGGCAAAAGTCAAGGAGAGGCTGTCAACATTCTGAGAAGCACAAGAGGTCTTGTTAAGTTACTGATTCAACGTGAAGAGATCACACAAGAACCTATAAAACCAGCTGTTGAGGTGAATGAAGAGAGCACCAAGTTTCTCCGTGAAGAAGGCAAACAAGTCTTAACGTTTAAGATTCCACTGAGTTATTCTGGTGCTGCAGGCCTTGGTATTAGTGtgaaaggaaaaatggaagaCGAACTACCACAAGACAAGGGAATTTATGTGAAATCTGTCATTGCTGGAGGAGCTGCACAAAAGGATGGTAGACTTCAACCAGATGACCAACTACTCAGTGTAAACAATGTGTCATTTCTTGGAGTGTCAAACTCAGAAGCCATTGAAAAGTTACGAACTGCAATGCAGACGACTCGACTTGGCCAAGCTTTTATCGAGGTTACAATAGCACGATACAAAGACAGTGAATCTGACTCCGTTCATGAGTTGCAGGTCCATCAACCTGAACATGAAAGACCCATTGAAGCAAGCTTGCAGGCAAATGTGCAAAGTCACATCCCTGAAACTGAAGTACAGCAGAATGTACCAGATGCACCTAACTGA

Transcript

BRAKERFUXT00000049698

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12053 all species →	Par3_HAL_N_term	N-terminal of Par3 and HAL proteins	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR052213 all species →	Family	Partitioning defective 3 homolog	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR021922 all species →	Domain	Par3/HAL, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16484 all species →	PARTITIONING DEFECTIVE 3 RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030010 all species →	Biological Process	establishment of cell polarity	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000049698.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000049698.1 across 18 RNA-seq samples of Telmatactis stephensoni. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

11TPM > 0

6Conditions

2.7Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mesentery	3	1	0.89	2.66
Club-tips	3	1	0.66	1.98
Actinopharynx	3	3	0.96	1.34
Tentacles	3	2	1.19	2.56
Pedal disc	3	2	1.22	2.65
Body column	3	2	0.80	1.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504	2.66
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504	0.00
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504	1.98
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504	0.00
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.34
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	1.27
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504	0.27
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504	2.56
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504	1.01
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504	0.00
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	2.65
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	1.01
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504	0.00
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504	1.49
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504	0.91
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504	0.00

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.