Gene detail

Detailed information of BRAKERFUXP00000050294.1 in Telmatactis stephensoni

Genomic Location: 000007F_pilon_pilon:714620...728325
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000050294

ATGTTTTCAGTGCGTTTGTCATCAGGGTTTCGTTACGGGCTTCGCCGCACTGTCTTACCAGCACGCAAAAGCCCCAATAATTGCTGTAACTTAAGAAAGGATGTTGTGCTATTCACTACTGCAAGCGATTCTCTTCCAGCTGGTTCAAAACGATTGTGGAGGCTCGTAAATTTGAGTGGTCGTAATGTCATCCATAATAAAGTGTGCTGCCAAACTGTAAATCTTACCAGATCGACAagCAGTTGGTTTTCTCCAAGACGGtattcaaaatcacaaaaaaatgGGGACAGCAGTTCAAGCTCATCAGAAAGCAATGAAAATGACAATCAAGATGATgacagtggtggtggtggtccaAAAGATGAACCTGAAGTTGTTGTTGAAGACAAGACAGGAATGAATGTCGACCCCTCCCAGGGGGCACTCACACAGATTGCAGTTCCTGAAGTATTCCCTGAAGTCCCTGTCATTCCAGTTCATAGGAATCCTGTTTTTCCACGTTTTGTCAAAATGCTGGAGATAAGTGATAAATCATTAATGGAGCTATTGAGGTTGAAGTGCCGTCATGCCCAGCCTTACGCAGgtgcatttttgaaaaaagatgACAGTAATGAGGCTGAAGTAATTACAAAGTTAGATGATATCTACAAAGTGGGAGCATTTGTACAGATTACTGAAGTACATGACATGGGAACTAAAATGAGAATGGTTATTCTAGGGCACAGAAGGATTCAGATATTGGGTGTGGCAGAAGACCCAGCACATGTTGAACTAGCACCTATTAAAAAGCAACCTGAGGAGTCACAAGAAAAAGCTGATGCAGTTGATAATGTTACTGAGAGTAGTGATGCTTTAAAGCCTATACTTATGGTCAGAGTAGAAAATGTCCTTCATCAACCATTCAAGACAACCCAAGAAATCAAGGCTTTATCAGCAGAGTTGATCAAGACCATCAAAGAGATTATCTCCCTTAATCCACTTTATAAGGAGTTTCTTGCACAGCTAATTGAGGGTGGAAAGAAAGTAGTTGATAATCCTGTTCATCTGTCCGACTTTGGTGCTGCTCTAACAAGTGCAGAATCTCATCAACTCCAGGAAGTTTTAGAAGAAACAGACATCCCCAAAAGGCTCAGGTTGACCTTGGAACTTCTCAAGAAAGAGCTGGCAGTTTGCATATTGCAACAACAACTTGGAAAAGAAGTTGAGGAGAAGGTGAATAAACACCAGAAAAAATTTCTCCTCCAAGAACAattaaaaattatcaaaagaGAACTTGGTCTAGAGAAGGATGACAAAGATGCTGTTGGTGAGAAATTCCGTGAAAGAATCAAAGACCTTCATGTACCTCAACATGCCATGGAAGTGATTGAAGAGGAACTTGGAAAGCTCTCATTTCTTGACACTCATTCATCAGAATTTAATGTAACAAGAAACTATTTAGACTGGCTGACTAGTGTTCCCTGGGGAATACACAGTGAAGAGAATCTAGATATCAAACGTGCTAAGGAAGTACTGGATGAGGATCACTATGGACTGCAGGATATCAAGGATAGGATCTTGGAATTTATTGCAGTTAGCCAACTGAATAGCAGTATCCAAGGAAAGATACTGTGTTTTACAGGGCCTCCAGGTGTTGGCAAGACAAGTATAGCCAAGTCCATTGCCCGTGCATTAAACAGACAGtatTTCCGCTTCAGTGTTGGAGGAATGACTGATGTTGCTGAAATCAAAGGGCACAGGAGGACGTATATTGGAGCAATGCCTGGAAAGATTATTCAGtgtttaaagaaaacaaaaacagaaaatccTTTGATTTTAATTGATGAGGTAGATAAAATGGGGCGTGGCATACAAGGTGACCCTGCCTCTGCATTACTAGAGTTACTTGACCCTGAGCAGAATTCAGGATTTTTGGACCACTATCTTGATGTCCCTGTAGACTTATCCAAGGTTCTCTTTATTTGCACTGCTAATGTAACAGACACAATCCCAGGGCCATTGAAGGACAGAATGGAGATCATACATGTCTCAGGTTATGTAGAGGATGAGAAGAAATCCATAGCAAAGGCTTATCTTATCCCCCAAGCCAGGCAGAAAACAGGAATCAAAGATGAGCAAGTGATTTTACAAGATGATGCTTTGGAGACTCTCATTAAATCATACTGTAGAGAGAGTGGTGTTAGAAACTTGCAAAAACACATTGAGAAGaTTTTCAGGAAATCTGCTCTCAAAATTGTCCAGGGAACAGGAGAAGTGGTCCAAATCACTCCAGATTCCCTCAAAGATTATGTTGGTAATGCAGTGTTCAATTCAGACAGAATCTATGATGTAACCCCACCAGGAGTGGTCATGGGACTAGCTTGGACATCTATGGGTGGTTCAACTTTATTCATTGAGACATCTCTTAGTGAAGTACTAGACAAAGATAATGACAGCCACGGTTCAATAGCTGTCACAGGACAACTTGGTGAAGTTATGAAAGAGAGTGCACAGATTGCTTACACTTTCTCCAAGGGATTTCTGGCAAAAACAGACAACAATAATGATTTCTTCAAAAAGGCAAAGATTCACTTACATGTGCCAGAGGGAGCAACACCAAAAGATGGTCCATCAGCAGGATGCACTATAATCTCAGCTCTGTTATCTCTAGCAATGAATAAACCCATCAGACAAAATATTGCAATGACAGGTGAAGTCTCACTCACTGGAAAGGTTTTACCTGTTGGTGgcatcaaagaaaaaataatagcaGTAAGTAGTGTTTAA

Transcript

BRAKERFUXT00000050294

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001331 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF05362 all species →	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan
PF02190 all species →	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008268 all species →	Active_site	Peptidase S16, active site	Interproscan
IPR046336 all species →	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR003111 all species →	Domain	Lon protease, N-terminal domain	Interproscan
IPR004815 all species →	Family	Lon protease, bacterial/eukaryotic-type	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR008269 all species →	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027065 all species →	Family	Lon protease	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR027503 all species →	Family	Lon protease homologue, chloroplastic/mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43718 all species →	LON PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERFUXP00000050294.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000050294.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.