Genomic Location: 000007F_pilon_pilon:714620...728325
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000050294 |
| Transcript |
| BRAKERFUXT00000050294 |
| Protein |
| BRAKERFUXP00000050294.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001331 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00004 all species → | AAA | ATPase family associated with various cellular activities (AAA) | Domain | Interproscan |
| PF05362 all species → | Lon_C | Lon protease (S16) C-terminal proteolytic domain | Domain | Interproscan |
| PF02190 all species → | LON_substr_bdg | ATP-dependent protease La (LON) substrate-binding domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008268 all species → | Active_site | Peptidase S16, active site | Interproscan |
| IPR046336 all species → | Homologous_superfamily | Lon protease, N-terminal domain superfamily | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR003111 all species → | Domain | Lon protease, N-terminal domain | Interproscan |
| IPR004815 all species → | Family | Lon protease, bacterial/eukaryotic-type | Interproscan |
| IPR014721 all species → | Homologous_superfamily | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Interproscan |
| IPR008269 all species → | Domain | Peptidase S16, Lon proteolytic domain | Interproscan |
| IPR003959 all species → | Domain | ATPase, AAA-type, core | Interproscan |
| IPR027065 all species → | Family | Lon protease | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR015947 all species → | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR027503 all species → | Family | Lon protease homologue, chloroplastic/mitochondrial | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43718 all species → | LON PROTEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004176 all species → | Molecular Function | ATP-dependent peptidase activity | Interproscan |
| GO:0004252 all species → | Molecular Function | serine-type endopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0003697 all species → | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0006515 all species → | Biological Process | protein quality control for misfolded or incompletely synthesized proteins | Interproscan |
| GO:0007005 all species → | Biological Process | mitochondrion organization | Interproscan |
| GO:0030163 all species → | Biological Process | protein catabolic process | Interproscan |
| GO:0051131 all species → | Biological Process | chaperone-mediated protein complex assembly | Interproscan |
BRAKERFUXP00000050294.1.Transcript abundance of BRAKERFUXP00000050294.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
| SRA run | Condition | Tissue | Developmental stage | Treatment | Study | TPM |
|---|---|---|---|---|---|---|
| SRR14511800 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511801 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511804 | Mesentery | Mesentery | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511802 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511803 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511811 | Club-tips | Club-tips | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511805 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511806 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511807 | Actinopharynx | Actinopharynx | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511808 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511809 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511810 | Tentacles | Tentacles | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511812 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511813 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511814 | Pedal disc | Pedal disc | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511815 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511816 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.00 |
| SRR14511817 | Body column | Body column | not recorded | not recorded | SRP319504 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
Genes whose expression across the transcriptome samples of Telmatactis stephensoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
| Direction | Partners | Most correlated partner | PCC |
|---|---|---|---|
| Positively correlated | 0 | not in this network | - |
| Negatively correlated | 0 | not in this network | - |
This gene has no edge at all in the Telmatactis stephensoni network, in either direction — it is not one of the genes the network was built from (the network covers genes with enough expression variation across the transcriptome samples). The counts above are a property of the network, not a failed lookup.
Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.
Whether this gene can be visualised in the single-cell atlases of Telmatactis stephensoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
