Gene detail

Detailed information of BRAKERFUXP00000051134.1 in Telmatactis stephensoni

Genomic Location: 000003F_pilon_pilon:754308...758421
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01066 all species →	CDP-OH_P_transf	CDP-alcohol phosphatidyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000462 all species →	Family	CDP-alcohol phosphatidyltransferase	Interproscan
IPR043130 all species →	Homologous_superfamily	CDP-alcohol phosphatidyltransferase, transmembrane domain	Interproscan
IPR050324 all species →	Family	CDP-alcohol phosphatidyltransferase class-I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14269 all species →	CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0032049 all species →	Biological Process	cardiolipin biosynthetic process	Interproscan
GO:0043337 all species →	Molecular Function	cardiolipin synthase (CMP-forming)	Interproscan
GO:0046474 all species →	Biological Process	glycerophospholipid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08744	CRLS; cardiolipin synthase (CMP-forming)	EC:2.7.8.41	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000051134.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.