Genomic Location: 000003F_pilon_pilon:1841975...1854688
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000051143 |
| Transcript |
| BRAKERFUXT00000051143 |
| Protein |
| BRAKERFUXP00000051143.1 |
| Family type | Membership / link |
|---|---|
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18995 all species → | PRT6_C | Proteolysis_6 C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR044046 all species → | Domain | E3 ubiquitin-protein ligase UBR-like, C-terminal | Interproscan |
| IPR039164 all species → | Family | E3 ubiquitin-protein ligase UBR1-like | Interproscan |
| IPR042065 all species → | Homologous_superfamily | E3 ubiquitin-protein ligase ELL-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21497 all species → | UBIQUITIN LIGASE E3 ALPHA-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0071596 all species → | Biological Process | ubiquitin-dependent protein catabolic process via the N-end rule pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10626 | UBR2; E3 ubiquitin-protein ligase UBR2 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of BRAKERFUXP00000051143.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
