Gene detail

Detailed information of BRAKERFUXP00000051166.1 in Telmatactis stephensoni

Genomic Location: 000003F_pilon_pilon:235565...250494
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERFUXT00000051166

ATGGCCGATGAGGAGCAGGAAATCTATGGCTATTATTATGGAGAAGAAGATAAGGGATTACTCGATCCAGCATGGGAAAGACAACAGAAAAAAACCTTTACAGCGTGGTGTAATTCGCACTTGAGGAAAGTTGGAAAGCAAATTAATGTACTCGAAGAAGATCTTCAGGACGGACATCTACTACTACATCTCTTGGAATGTCTTTCAGGAGAAAAACTCCCAAAAGCAGAAAAGGGTAGACTGCGTTTCCATCGCATTGCAAATGTTAACAAAGCGCTGGATTTTGTTTGCAGCAAAGGAGTGAAACTTGTTTCTGTTGGAGCTGAAGAAATTGTGGATGGCAATCTGAAGATGACTCTCGGTATGATTTGGACCATCATTTTGCGGTTTGCTATTCAAGATATCGCCATCGATGATATGTTTGCAAAAGATGGTTTATTATTGTGGTGCCAGCGAAAAACAGCTCCTTATAAAAATGTAAACGTCCAAAACTTCCATACCAGTTTCAAAGATGGTCTTGCATTCTGTGCTTTAATCCACCGTCACAGACCAGATTTAATTGACTACGACAAACTAAGAAAGGATGATCCTTATACCAATTTGAACACTGCCTTTGATGTAGCTGAACAATACCTCGACATCCCTAAAATGTTGGATCCTGAAGACATGGTATTGAATGAGAAACCTGATGAACGTGCTGTTATGACCTACGTCTCTTCTTACTACCATGCTTTTGCTAGTTCCCAACAGGCTGACACAGCAGCCAAACGAATTGGTAAAGTGCTGAATATCAACAGAGGAAATGAGAAGATGATGGAAGACTATGAGAACTTGGCTAGTGATCTTTTGGATTGGATTAACAAGAAAGTTCCACAATTTGAGGACAGGCGATTTGATGGAACCCTTTCAGACATACAGAACAAACTTCAAGATCTACAAAATTATAGGCAAGACGAAAAGCCCCCAAAGGCAGAAGACAAAGGTACCCTTGAGACCAACTTCAACACCCTTCAAACAAAACTGAGACTCAGTAATCGACCTGCATTCCTCCCTACTGAGGGAAAGATGATCAATGACATCAATGAAGCTTGGGGAAGACTTGAAGCTGCAGAGAGGGATTATGAGGATTGGCTGCTTATTGAACTAAGAAGATTGGAAAGACTCGACCACTTGGCTAACAAGTTTAAGCATAAGTGTACAATTCACGAGGCCTGGACAGAAGGCAAGGATGAGCTTCTTTCACGAGATGATTACTCAAATGctaatttgaatgaaattctGGCTTTAATGAAGAAGCACGAAGCTTTTGAAACTGATCTAGCTGCTCACCAAGACAGAGTAGAACAAATCAATGCCATTGCAGAAGAGCTTGCtgCATTAGAGTACAGTAAAATTGATGAAGTCCAAAAGCGCCGTcagaataTCTGTCAAAACTGGGATCATCTTGGTGAGCTTACCGTGCAACGTCTTCAAATACTGGAGGAAAGGGAACAGCAACTTCAACATCTTGATAATCTTCGCTTAGAGTTTGCCAAGAAAGCAGCTCCATTTAATAACTGGCTTGAGGGAGCAAGAGAAGATCTTATGGATCTGTTTATTGTTCACACCACTGAAGAAGTGCAGGAACTGCTAGATGCCCACACATTTTTCAAAGCTAATATGGCTGCAGCTGAAGAAGAGTTTCAATCAATCATGGATATCAACGATCAGCTTAGTCAACTCAGTAATCAAGAAAATCCTTACACTTCTCTCACAAGCCAAGATATTGAAACTGCATGGCATGAAGTGCTAAGACTGGTTCCAAAGCGAGATCAGTTACTGGGTGAAGAAAAAACAAGACAAGAGCAAAACGAGCGCTTACGTGTTGAATTTGCACAAAAAGCCAATGTGATGGGACAGTGGATTCAACAACACAGTGGCAAGCTTCGTACGATTGTTTTGAGTTCAACAGGAACTTTGGAGTCAACTCTTGGTTTACTGCAAGAAGAACATAATACAGTCGTAGGTCAGAAGCCAAATATTGAGGAACTGGAAGATATTAATCAGAAAGTCCAACAAGCTTTGATATTTGAGAATCCACATACACATTACACCATGGAGGGCATCCGAGTTCGTTATGAGCAGCTTCTCCAAGGAACAGGAAAAAGCATCAATGAGGTGGAGAACCAGATATTGACAAGAGACTCCAAAGGAATCACAGAAGACCAAATGAAAGAATTTCGTTCTTCATTTAATTTTTTCGACAAGGATGAGAATGGCAAGCTTGAACCTAACGAATTCAAGCAGTGTCTTGTCAGTTTAGGTTACAACTTAAAGGAAGGAGAAAAGGGCGATAAGGAGTTCGAACGCTTGATGAATCTCGTAGATCCAAATAACACCAAGAAAGTATCATTCCAAGCCTTCCTCGATTTCATGACGAGAGAGGTGGCTGATACAGACACTGCCGAACAGGTCATGGAATCTTTCAAGATCTTGGCTGGAGATAAGCCATACATCACTGCCGAAGAGCTACGACGAGAGCTGCCTTCTGACCAAGCAGAATACTGTATTGCCCGCATGGCTCCTTATGAAGGTAGAGACGCAATGCCTGGTGCACTGGACTACATGTCATTCTCCACAGCTCTTTATGGCGAAAGTGATCTTTAA

Transcript

BRAKERFUXT00000051166

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030018 all species →	Cellular Component	Z disc	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055001 all species →	Biological Process	muscle cell development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05699	ACTN1_4; actinin alpha 1/4	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERFUXP00000051166.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

18Samples

0TPM > 0

6Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Mesentery	3	0	0.00	0.00
Club-tips	3	0	0.00	0.00
Actinopharynx	3	0	0.00	0.00
Tentacles	3	0	0.00	0.00
Pedal disc	3	0	0.00	0.00
Body column	3	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR14511800	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511801	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511804	Mesentery	Mesentery	not recorded	not recorded	SRP319504
SRR14511802	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511803	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511811	Club-tips	Club-tips	not recorded	not recorded	SRP319504
SRR14511805	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511806	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511807	Actinopharynx	Actinopharynx	not recorded	not recorded	SRP319504
SRR14511808	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511809	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511810	Tentacles	Tentacles	not recorded	not recorded	SRP319504
SRR14511812	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511813	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511814	Pedal disc	Pedal disc	not recorded	not recorded	SRP319504
SRR14511815	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511816	Body column	Body column	not recorded	not recorded	SRP319504
SRR14511817	Body column	Body column	not recorded	not recorded	SRP319504

Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM, StringTie quantification over 18 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.