Genomic Location: 000002F_pilon_pilon:140224...149108
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000051412 |
| Transcript |
| BRAKERFUXT00000051412 |
| Protein |
| BRAKERFUXP00000051412.1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00588 all species → | SpoU_methylase | SpoU rRNA Methylase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001537 all species → | Domain | tRNA/rRNA methyltransferase, SpoU type | Interproscan |
| IPR029028 all species → | Homologous_superfamily | Alpha/beta knot methyltransferases | Interproscan |
| IPR045330 all species → | Family | Probable methyltransferase Trm3/TARBP1 | Interproscan |
| IPR044748 all species → | Domain | Trm3/ TARBP1, C-terminal | Interproscan |
| IPR029026 all species → | Homologous_superfamily | tRNA (guanine-N1-)-methyltransferase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12029 all species → | RNA METHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0008173 all species → | Molecular Function | RNA methyltransferase activity | Interproscan |
| GO:0016423 all species → | Molecular Function | tRNA (guanine) methyltransferase activity | Interproscan |
| GO:0030488 all species → | Biological Process | tRNA methylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15333 | TRM3, TARBP1; tRNA guanosine-2'-O-methyltransferase | EC:2.1.1.34 | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of BRAKERFUXP00000051412.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
