Genomic Location: 000000F_pilon_pilon:3095262...3104873
NR annotation: no NCBI-NR hit recorded
Species Telmatactis stephensoni · all data for this species · gene families
| CDS |
| BRAKERFUXT00000052236 |
| Transcript |
| BRAKERFUXT00000052236 |
| Protein |
| BRAKERFUXP00000052236.1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10437 all species → | Lip_prot_lig_C | Bacterial lipoate protein ligase C-terminus | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR004143 all species → | Domain | Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain | Interproscan |
| IPR019491 all species → | Domain | Lipoate protein ligase, C-terminal | Interproscan |
| IPR004562 all species → | Family | Lipoyltransferase/lipoate-protein ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12561 all species → | LIPOATE-PROTEIN LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0036211 all species → | Biological Process | protein modification process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0009249 all species → | Biological Process | protein lipoylation | Interproscan |
| GO:0017118 all species → | Molecular Function | lipoyltransferase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10105 | LIPT1; lipoyltransferase 1 | - | Lipoic acid metabolism | ko00785 | deepkoala |
Transcript abundance of BRAKERFUXP00000052236.1 across 18 RNA-seq samples of Telmatactis stephensoni. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Mesentery | 3 | 0 | 0.00 | 0.00 | |
| Club-tips | 3 | 0 | 0.00 | 0.00 | |
| Actinopharynx | 3 | 0 | 0.00 | 0.00 | |
| Tentacles | 3 | 0 | 0.00 | 0.00 | |
| Pedal disc | 3 | 0 | 0.00 | 0.00 | |
| Body column | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (TSTEP_TPM,
StringTie quantification over 18 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
