Gene detail

Detailed information of BRAKERHOCP00005000589.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: KAJ8318671.1, hypothetical protein KUTeg_003762 [Tegillarca granosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005000589

ATGAGAAAACGCAGTAGAAAAAAAGCGAAACAAAGTGTTGAAGTTGATTCAATGGATATGCCGCCTTTATCTGcaacaaatgaaatacaaacaaCCAGACTGGACAATATTAATGAGAAAGAGACTCTGCATTGTGTTTGTCAAACGCCTTTTAATGATCAAAGCTACTATATTGGATGTGATGTATGTAACAATTGGTTCCATGGTGATTGTGTTGGCATATCTGAATCAGATGCAGAAACTATTACTGAATTTATCTGTAGCATATGCAGAAAAGAAGTTCAATCTATAGAAGAAGGCAacattcactgtatttgcaaGCAACCATATGATGATACAAAGTTTTATGTATCATGCGACAACTGTCAACTGAAGTTTCATGGTTTATGTATTGGTATAACACAATCtcaaattaatgaaattaaaacttaCATCTGCACTACTTGCACAAACACAAATACTACAAGTAAAGATACAGCTGACATTCCAAGTAACAAATCATCAAATCCAATTCCAAAtgaattgatttcaattgatGATGCAGCACAAAATACCCGctgtaaaatagaaacaaGTAATGTTACCTCCAACTCAGACTCAACATCTGGTATTATTGagGCAAAAAAAATCCATAGTAATGAGAAACCTCATAAATGTGATGAATGTGGTAAAGAGTTCAGATTAAAAGGTGctttaactgttcataaacgAATCCACAGTGGAGAAAGACCTTATGTGTGTGGAGAATGTGATAAATGGTTTGCCCAGGCAGCTCATTTGGAGGCATGTCATAAATGCAGCAATTGTTTGTTggtattttcttctgaagtaTTCTTAAAACGGCATATCTGTTCATACAAAAAACGTACAAAACTGTCATTGAGCATTGCATCAGAGAAAGACGCCTGCACAGATAATGTAACAACAGGGCTAACCGCTCCATGTTTTAACAATCCAGCAATCTACGGAAGAACTGAAACAACTAGATGTCAACCTGATAAGTGTGAAATTTGTAATAAAGAATTCACTTCTAAAGCTAGCTTAATTGCCCACAAGAGAATTCATACTAAAGAAAGACGTTTTAGGCAGTCAGCTGAGTTGCACACATCGAAGATCTTCTATAATAATGGAAAACCTCACAAATGTGATGAATGCAATAAAGAATTCACTACCAAAGGTAGTTTAACTTCACATAAACGAATCCATAGTGGAGAAAAACCCTACGTATGTGAAAAATGTGATCAACAGTTTACACAAGCAACTAATTTGAATGCACATAAGAAAATCCATAGTAATGAAAGATCTTATAAATGTGATGAATGCGATAAATCTTTTAGTATCGAAAAGtatttaactgttcataaaagAGTCCATAGTGGAGAAAAAGCTTTTGTATGTGAAAAATGTGATAAACGGTTTGCGCAGAGCAGTGGTTTGACGATACATCAATTTTGTCATAGTAATGAAAAACCTCACAAATGTGATGAATGCAATAAGGAATTTACTAccaaacataatttaactgttcataaacgAACACATAGTGGAGCAAAACCTTATGTGTgtgaaaaatgtgaaaaacGGTTTACCCAACAACATCATTTGAGGAGACATGAGATAATCCACACTAGTAAGAAACCTCATAAATGTGATCATTGCAAAATAGAATTCACTACCAAAGGTAATTTGATTCTTCATAAACGAATTGACTGTGGAGCAAAATTTCTAGCAAATAgtttaaatattatcaaatcctACCATCGTTATGAAAATCGTCATACATGTGATCAATGCgataaaaaattcatcacCATGTATAAGTTGAAACAACATAAACGAATCCATACTGGAGATAGACCTTATGTTTGTGATCAATGTAATAAAGAATTCGCTACCAAAGGTACTTTAACTGTACATAAACGAATCCATAGTGGTGAAAGACTTTATGAATGTGGAGAATGTGATAAACGGTTTACCCAGGCATCTCATTTGGAGGCACATAAAAAAATCCATACTGGTGAAAAGCCTCATGAATGTGATGATTGCGGTAAAGAATTCAGATTAAAGGGTGCcttaactgttcataaacttacTGTACATAAATTGGATCACACTGGAGAAAAACGTTTCAAATGCAAGGAATGTGGAAAATGTTTTactcaatcattttatttgcatATGCATAAAATATCTCATAAGAAGAAAACACCTTTTGAATGTGAGAAGTGTAACAAAGGTTTTACTGTTAAGGTTAGTTTAGTTAGGCATATGCGGATTCACACAGGAGAAAAGCCTTATTCATGCAATAAGTGTGAATGGAGATTCTCTCAAAGGGGTAGTTTGAAAAGACACATGAAACGTCTTCATGACAAAGGACTTTAA

Transcript

BRAKERHOCT00005000589

Protein

Uniprot

Gene family

Uniprot term	Description
Q9W0T1	Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2
Q6BER5	Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans OX=6239 GN=nurf-1 PE=1 SV=2
Q12830	Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala