Gene detail

Detailed information of BRAKERHOCP00005001057.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_006825770.1, PREDICTED: vam6/Vps39-like protein-like [Saccoglossus kowalevskii]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005001057

aTGCATGATGCATTCCGTTGTTATCCCATATTGGAGAAATTGCCTCTGCAAATTGACTGTATTGCAAACGAAGGTGATAGCCTACTAGTTGCAACAAACAGATGTCAATTATTGGTTTATAATGTCCAAGAAGAACCTTTAAGTTCAGGAGATAAAAAGTTTGCAATTgaaataaagaagtcaaataAATCTTTTTCAAGAAAAACTGTTTCGCAGATATGTATTGTCAATGAATTGAACATCATCATAAGTCTCTCAGATGGTACAATCAATGTTCATGATCTTTCAACGTTtacattgaaatttcaaatatcaaGAGCAAAAGGGGCATCATACTTTGCCTTAGACATTAAGACATTCCAGTGGCAGAGAGGGACCTTTGAAGATCTGAATCAAAATCTTGGCGTTAGTGATGTGCCAAAATCCATTGCATGGATTGGAAACTTTATTTGTACTGCCGTAAGAAGGGAGTATTTTCTAATTGAGACCACAACTGGCACACTAAGTGACTTATTTTCATCTGGAAAGACAATTGAATCATTAATCTGTCAGTTGCCCAATGATCAACTTGCCCTCAACAAAGATGAAATAACAGTTTGTATATCATTGGATGAACATAATATTCCAAGGCAAGAACATGCGGCAACATGGACAGATGTACCAACTGACATAGGCTATGTTGATCCATATTTCATTGCCCTTTTACCTAAACATGTTGAAATCCGCTCTTACAAACCACGTCTACTGATACAGCagattgatttatcaaaaccACGATCTATCTACATCGGTTCATCATGTCATATAGCCTCACATTCTTATGTTTGGCGTCTATTGCCTGTTCCTTTAATAACACAGATTGATCAACTACAAGAAAAGAAGCAATTTGAACTGGCTATAAAACTTTGTGAGTTAATGGATAGCGACAAAGaagagaaagaaaaatatttgaataaaatcaaGATGCGTTCTgcttttgatttattttgtaaaaaaaaatttgatatgTCACTCAAACTCTTCCGAGAATTAAAGGCTGATCCAACATTTGTGATTGGCTTATACCCAAATCTATTACCAGAAGATTACCGCAAGCAAATTGATTATCCTGACATACCCTCTTCTTTAACTGGTGGGGAGCTAGAAAAAGGTCTATTTGCCCTAACAGAGTATCTGACACGAttgaGAAATGAAAAAACTTCAAGTAAAGCTTCTGAAGATAACCCTGATTCACTCAAGATGCTgttgcaaataattgatacaTCATTACTCAAGTGTTATTTACAGATTAACGAGGGTATGGTTGCACCTTTACTTCGGTTGAGAGATAATAACTGCCACCTTGAAGAAGCAGAACGTGTTCTAAATAAAGGAAAGAAATACCCAGAACTGGTTCTTCTTTATCAAAGCAAAGGAGCTCACAAGAAAGCTCTTGAGTTGTTACTACGCCAAGCAGACAAACCATCAAGTAGTCTTGGTGGACATTTAAAGACTGTAGAATATCTACAGAAGCTTGGCCCACAACACGTAGCTTTGGTATTAGAATATTCAATATGGGTCCTTAAGAAATTTCCTATGGATGGTGTTAGGGAGCACATCATCTTTGATTGGCGAGAAGAAGGCCCTCAATTTCACAATAGACTTGTTGGTTGTTACCAAGATACCTTAGTGCCATTACTAAGGGAGCATTTACAGTCTCTACCTGAAGGTTGCCCACCTCCGCTAGCTGGCAAAGAACCAGATGAGATTGGCGATTACCATCGTCGAATGTTATTCTTTCTTCAAACATCCAATCATTATCAACCAATGAAGCTACTTCGGAATTTCCCATTAGACTTGCTTCACGAAGAAAGAGCATTGCTGCTTGGACGAGCTGCCCGTCACGAAGAAGCTCTCGCAATATACATTCATGTGTTGAAAGATACAAAGCTGGCAGAACAATATTGTCGTCGTCAGTACGaggaaaacattgaaaaaagcAGACATGTGTATATCAACCtgttgaaaatgtatttaaaacCAAACGAAGTTCCATTACTTGGTTTAGGTCAATCGCTACTAGGCGATGCGGTTTTGAAACCGAATTTTGAAGCTGCAATTTCTGTACTCAATAACCATTACAGAAAAATTGATGTCGATCAGGCTTTGGAATTGATTCCTGCATCATTTGGAATCAAAGAAATTTGCACATTTTTCTTGAATGTTCTGAGTGAGAAAATGGTCACACGGAGAAGTTTACAATTATTCAAGAGTTTACTTTATGCCGAACACTTACAGGTACATGAACAGCGAATATTTCATCAGAAAAGAAGCTGTGTTATAACAGAAGAGAAAATGTGTATCGTTTGTCACAAGAAAATTGGTCTCAGTGCATTTGCTTGTTATCCCAATGGTACGGTGGTTCATTATTACTGTTGTAAAGATAGAAGACAGTGTCCAGACGATACTCAACGATGA

Transcript

BRAKERHOCT00005001057

Protein

Uniprot

Uniprot term	Description
Q8R5L3	Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1
Q96JC1	Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2
Q9VEA2	Vacuolar protein sorting-associated protein 39 homolog OS=Drosophila melanogaster OX=7227 GN=Vps39 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10366	Vps39_1	Vacuolar sorting protein 39 domain 1	Repeat	Interproscan
PF10367	Vps39_2	Vacuolar sorting protein 39 domain 2	Domain	Interproscan
PF00780	CNH	CNH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032914	Family	Vam6/VPS39/TRAP1 family	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001180	Domain	Citron homology (CNH) domain	Interproscan
IPR000547	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR019452	Domain	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1	Interproscan
IPR019453	Domain	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12894	CNH DOMAIN CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0034058	Biological Process	endosomal vesicle fusion	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20183	VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39	-	Membrane trafficking	ko04131	deepkoala