Gene detail

Detailed information of BRAKERHOCP00005001179.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: CAH3031240.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005001179

ATGGAAGTTGGGGTGTCTACAAACGATAGTTCCGTCATAACCAAATTACAGTATCGACAATTAGTTACCCCTGGATTAAATGACTCATTAAAAGAGAATAGTTACACAGTGGTGAAGATAGCCAAAACAGTTGGTGAATTTTGTGGTAAAATTGCTACTTTGAAAGAACAAACAGCATCCCAGATAGCTTCTTTGATAGATACATATCGAAAGAAAACGGTAGAAATTAGAAAAAgACCAGAATGTCAAAGTCATACTTTACTAACAGCATGGGATCAAATCTTAACTGAGGTTGAAAATGAAGGCAAGCAACTGTCAGAATTGGCTCAATGTCTTCAGAAAACAGTTGCTGTTCCATTATTTCAAGCTGCAAACAAAGAGAAAGCTGTTATCAAGAAGACATTTGCGTGTCGAGAAATGTCACATCATGTAGCATTGAAAGCTGAGGATTCTTTGAATAAgAAATATAAAGATTATTCAGAATCATGGTATAAATATTCGTCACATGTCAAAGATACTTTAAAGGATCGACATTTCGCACAATACCACAATTGTCACAATTCATATGTACTGCAATTATCATCTGTCAACAGCATTAATGAAACGCTTTATACTAGTATCGTACCTGAAGTAATTGATGATTTACAAGAAAGCCACCATAATCTCACTGATTCATTACTGAATTACATGCAAGGTTTCGCAAAAGTACAACAAGAAAGTCTTTCCAAACTATTAACTTGTATGGGAAATGTTGTTACCGCTTGTCAAGCCATTGATCACTTGAAAGATATAAATAGTTTTGTACATGCCTTTGAAAAAGATGTCGATGTCAAACATCCTGTCAAACATTTTGTTCTTCCAAAAGTTGCAAAAGAACTCAAAGATGACCCAAAAGACTTGACGTATCTAGATCCATCACTAATTGTTGATGATAAAACTGAACCAGTTTTAAAACGAAGATGTGCTTATACTAGAAAGCAAGTAAGTGAAACaataatcatttatttaatcaaaGGACAGATTAATTCATTAGAAAACAACATTCAATGTCAGGTTTTACCTACACTTGAATCACAGCCTGAAATAACGACTCCTACACAACCTGGAGAGACATTTGAAGAAGTGTTAGTTAGACGAAAACATGAAATCAGATCAATGAAATGCCGATTAGAAATGCATCGAGCTCAGcATCAGTTATTTACACCAAGTGTTCTTGAAAGGCTTGGCCCTGTCACTGAAGAATATGCTGATGACCTGGAAGATATTGCAAATGAAGAAGCGCATGACGTACAAACTACCAAAGCAACGCTATCATCAGCTCGTTTAGATAAAGAAAAACCGCATCGATTTCTCGATCAAAACTTTATGAAACCTGCTCTGTGCTATTACTGTAAAGGAATCATCGTAGATACAATTTCACCCAATTATGAAGCAACAGACAGTATGGATTTAGACCCAGCTGTTGAAGCAAAAATAAAAGCATCCTTGAATCATCGTAACCATGACGATGAATTCGATAGTGAAGATGACTATGaaatgCCTTATGAAGAAGGCACGGCAAAGAACATTCCAACTCATGTGATTATCACGCATAACAAACGTCCGGCTGCAGCCCAACCTCCTCCTCCAGCCCAAACATCGAATAAAACGTCTGCACCACCTTCGTCAAAACCTCCACTGCCACGACGCCCACCAGAGTTGTTTAAAACTTCAAAGGATCATGATAATTTGTGTGTTgcattatttgattttgaagctGCTCAAGATGTTGATTTATCACTCAAAGCTGGAGGACGTGTTCAAGTTTTAAATACAGAAGATGTTGATTGGTGGGAGGGTATTGTGGATGGAAAACAAGGATATTTTCCTGCCTCTTATGTCCAGCCTATCAAATCAGATGATCATATTTTGCGTTGCTTGTATGATTTTTCTGCCGAAGATGGTGATGAGTTATCACTGGAACAAGGACAGATTATCGTTCAAGTTGAAAATGAAGGCAATGGTTGGATAGTCGGCCgtatacaaaataaacaagGAGCATTTCCTGCATCGTACGTCGAAGAAGTTCAACCAACTTGA

Transcript

BRAKERHOCT00005001179

Protein

Uniprot

Gene family

Uniprot term	Description
Q6DBR6	SH3 and cysteine-rich domain-containing protein 3 OS=Danio rerio OX=7955 GN=stac3 PE=1 SV=1
Q9P7E8	Protein app1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=app1 PE=2 SV=1
P53281	LAS seventeen-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSB1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15735	FCH AND DOUBLE SH3 DOMAINS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20121	FNBP1; formin-binding protein 1	-	Membrane trafficking	ko04131	deepkoala