Gene detail

Detailed information of BRAKERHOCP00005001462.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_047125274.1, synaptojanin-1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005001462

ATGGTTCTTGGTAAGAATTTTATTTGCAGTAAACGGAGTGATGGAGAACGTTTATCTATTTTACTTGACAATCGTACGAAAACAGACACAGTGATGTTTGAAGGAGGTGTTGTAGCCGAACTGAGTACTGCTGAAGCCGATGCTCTACGTCGGCAGTACACAAAAGTCACTGATGCTTATGCTTGCCTTGGTGTAATGAATCTATATATAGATGACGAATGCTACTCATATCTTATGTTAGTTACTGGCTGTACATCTATTGGTAAAATATGCGAATCAGATATATTTCGGATATCAGGATGCACTGGAGTCGCTTTGCAAGAACCATCAGAATTAGATAGTAAAGTTAACGAAGTACAGAAATTAATAATGTCTGGttgtttttacttttcttGGACTGCTGGTGAGAATCCACCATATGATTTGTCATTATcatcacaaagaaaacatttgcaaaaaGAATCTGATAATCGATTTTTTTGgAATCGTTCGTTCCATTTACTTTTGAGTAAATTTGGTTTAAATTGTGATAAATGGTTAGTACGTATGACATGTGGTAGTATTGATATAAGAACAATTTATGTTGGTTCCAATCAAGCAAAAGCTTGTCTGATATCACGTTTGAGTTCTGATCGCGCTGGCACAAGATTTAACGTCAGAGGAACAAATGATGAGGGTCATGTGGcaaattttgttgaaacaGAACAGTTGGTTATTAATGATGAAACTGTTACTTCATTTGTTCAAACAAGAGGATCTGTTCCATTGTTTTGGGAGCAACCAGGAGTCCAGGTTGGTTCTCATAAAGTGAAAGTATCCAGAGGATTTGAAGCTTCACAACCTGCGTTTGACAGGCATATATCGCATTTAAAGCAAGTATATGGATAccaattatttatcaatttattaggAAGAAAAGAAGGAGAAAATAGTTTAAGTATGGCATTCAAAGAACACTTGAAATCATCTCAACATAGTTTTGACACTCGTAtcattaattttgattatcattCTCATTGTCGCGGCGGAAAAACAGCAAAATTAGATGAACTTATGGAAAAAGCAAAACCTTCAttagaaaatttcaaattcttttCATACTACAATGGCAACGTTACAAGTTCTCAAGGTGGGACAATTCGTACAAACTGTCTTGATTGTCTGGATAGAACAAATGCAGTACAATCCAAATTAGGAATGAAGCTTTTAAGGGAACAGCTTAAGAGTATTGAGTTAACAGATAAGCCTGGAATTGTTGATCGTTTTCAAGAGACATTTAAAAATCTATGGATACAAAATGGCCATCAAGTTAGCCGCATGTATTCTGGGACTGGTGCGTTAGACTCTAGCGTAAAAGGAACGGTTGCTAGCAAATTGCATGATGGAGCCGTTTCAGTAAAACGTACAATAAAGAATAATTTCTTTGATGGTAGCAGACAAGAGgcaattgatattttactagTTGGAAATACATTCATCGGTCCAATTGGTGAACGAGCAAGAGCGTTATTACATTCAGGGTTTCTACATTCATCTCCAAGTATTTTACGAGAACTTTGTTTAAAACATCATGAATATTCAGAAATGACGGAAGCACGTGTTTGTGTTGGAACATGGAATGTTAATGGTGGACGTCATTTTAGAAGTATTGCATACAAGCATCAATCAATGCATGATTGGTTATTAGACTGTCCCAAATTAGCACCCGAAGGAATAATGGACAAGGAAGCAGATTTTTCAACTCCTCCTGATATTTTTGCTATTGGCTTTCAAGAGTTGGTTGATTTAAATATAAGcaatattatttcaacaaGTTCTACCCAGAAAAAACAATGGGGTAGTGAATTACAACGTATCATATCACGTGATAATCCGTATGTTCTAATCACGGTAGAACAACTCGTTGGCGTTTGTCTCTATATTTTCGTTCGTTTACATCATGTTCCATTTGTCAGAGACGTTGCTATAGACAGTGTTAAAACTGGCATTAAAGGCAGTGCCAATAAAGGAGCTGTTGCCATTCGCATGCGCTTTCATTCAACGTCACTATGTTTTGTTTGTGGTCATCTGGCTGCTGGGCAATCAAATATTGATGAGCGTAATAACAATTATCATGACATCAGCAGGAGGATAGCATTCCCTATGGGTTCATCTCTTTTGTCTCATGATTATGTTTTCTGGTGTGGTGATTTCAATTATCGTATTGATCTACCTAATGAAGTTACTAAAGATTTAGTCAGTGTTCAAGATTTTCATCAACTGCAATGCAGCGATCAACTGTCTCTTCAAAAAGCTGAAGGAAAGataTTTCGTAGTTACATTGAAGGGCCAATAAACTTCCCTCCAACATATAAGTATGATTTATTTTCCGATGATTATGATACAAGTGAAAAATTTAGAACGCCAGCATGGACTGATCGTGTATTATGGAGACGAAAAAAATATCGTAAATTTGATACTGAAAATAGAAGTGGATCAATCGATGCTGTGGATGATTCCGATCAAGAAAATGAAGAAGACGGAGAAGAGATTGAAGATGAGAAACAGACTGATGTTTGGAATCCTGGGCAATTGTGTTATTATGGCAGAGCAGAGCTTAGAACATCTGATCATCGGCCAGTTATTGCCATGCTTGATATTGAAGTACAACATGTTGACAataagaaattaatgaaaactCATGAAAGTGTAATGCAATCATTTGGTCCTGCTGATCCAACAATAATTGTACGATCTTCTAATGTATCAGATGATGAAATGTTGGATGTTAATGGTCTAATCGATTTATTTGAACCGTTTGGGGCCATTATATTAGTGAGAATTGTTGAGCAAGATGTTCTTCTTACATTTGATAATGGTCGGAGTGCATTTCAAGCACTATCTTGCAATGAAAAGATGGTTGGAGATTGTCAGATTGAAGTAGTATTAAAATCACCAGAAACACTTTCAAGTACAGATTTACCATTGCAAATGTTGGTATCAgctgatattgaaaatattaataatgatgataataatgttaCATCTCAAACACGTCAAAGAACAATGTCAGATATATTGAGTATGTCATTTCCTCTTGATGATAACTCGTTATTAATACCAGAAAAGATAAACGAACAAATCGATTatagtgatgatgatgaagatgatgatgggAATGATAAACAAGTATTTTCTGATCAAGATAATGTACCTTTAAATGATGACAATGTTAATTCTATTGATTCTGACGAAGAGGGTATTATTGATAACGAAGAAACTTTGATTATGCAACGGAAGGAAGAATTAATCGATAGTGATGATGAGATTGTAGAAGATGAGAAACCAAAACTTGTTACAAAGAAAGCCCCACCCCCTCGTCCTACATCACGTCCTGGTCGTCCACCGCCACCAAAAGCTACATCATCTCCTTCAAATACCCCGCCATTGGAAAAACACAGACCTCCTAAACCAAATCTTCCACAACAGAAAACTGTTGACGATAGTAAACCCAAACCATTGCGACCTGGCAGACCACAGCCAATGAAATCTACAACATTATCTCTTGACGATGGAACTACCAACGAATCAATAGTTCCCCAGGCGACTAGTAAAACTGAAGGGGGTGAAACACCCTTAAATAAGCCACCGCCAAGACCTATTCAGGCAACTACCCTGGTCGATAAAGCTAAGacgGATGAAAGCATCAGTATTCCATTCaatgttcatcatttattccaTGTTGATGCAACCAATGTAGACcaatttatagaaaatatgaagaaatctGGAGGAACATTAAAGCCTCAACGTCCAAATATTCTTGGTACTCTTTCACAATCAAGTAGCAACACAGTTACTAAACCTATAACTAGAGAACCAGTTAAACCAAAAGCTATCCCTCGGTCTAATACAGTATCTGGAGGTCCAGTAAAACCACCTCGAAGGCCAGAACCTTCAAAATCAAGAGAAAGACCAGCAGCGCCTCCACCTAGACCAATATCTGTATTCCAGGAAGCGTCTAAACCTGTGCCACCTCAGCGACCAATTAACAAACGACATACAATGCCACCCCAGACGTCAGAAGCACTTGACAAAAATGTCAAAGAGGCACCTCCTCGTCCGGCTGCTCGTCTACCAACTGCAGTAACTGTCAATGAAGAAGATGATGAACTTATCAATTTaccacaaagtaaaaacactCCACCAATTACGAAAAGAAGTGATCGACCTTCTGTACCAAAGCCATATGCGGCTCATCCAAAATCAAGGAGCACAGACCAATCAAATCAAGAACAAGCTGTGGatacaatatcaaattctAGTTTAGATATTGACGGAGAAAGCATATCAAGTACTAATACAACATCTAGTACATCACTTAACATTATAGATTCAACAAACGAACAATCGAATGATGATTCTAGTCGTCATGCAACACCTGATCTTAATATTCCTCCTCCTGTACCTGATAGAAAAGATGACGATATATTGCGCTCAAAGACTCCTGGTGAAACTGAATTAGGACAGTGTAATGATTCAATTAGCAAACATAAACAATCATTGGAAAATAATACCGAAGGAGACAATCCTACTCTAGTGCCTAATGGTACTAAAAAGGCACCCCCTCCACCGTTGCCTCCTAGttttttaattttatttgtttatttgttgtaCTGTGTCGACATCTTTATTCCATTGGAAAAAGAAGTTTGGAAGACAATATGGgcgtcaaattcaattttgattcaCGGAGGGACAGTGGTGAATGAAGATCGAATGTTTAAAGCAGATGTTCTTGTCACAGATGGTTTAATTAGTCAAGTGGGTTATGGCTTTGCTGTTCCGGAAGATGCTGTGAAAATCGAGGCTGATGACCTCTATGTCATGCCAGGTGGAATCGACAGCCATACACACATGCAGCTACCTTTCATGGGTACGGTTGCTGTTGACGATTTCTATCATGGTACAAAAGCTGCTGTTGCTGGTGGAACTACTATGATCATTGACTTTGTCATACCACAGAAAGGAGAATCGTTAATTGATAACTTTCATAAATGGAAAGCATGGGCTGATGAAAAAGTTTGTTGTGATTATGCTTTCCATGTTGCCGTGACGTGGTGGAGTGATCAAGTAAAAAAAGAAATGGCTACTCTTGCATCAGAACATGgtataaattcttttaaatgttttatggCGTACAAAGATGTTTTCATGCTTGACGATTCACAGCTATACAAATGTTTTGCTAATTGTCGAGAAATTGGTGCACTTGCTCAAGTCCATGCAGAAAATGGTGATCTTATTGCCGAGgGCTCAAAGAAAATGATAGCATTAGGCATCACCGGTCCTGAAGGACATGAAATGTGCCGTCCAGAACATGTCGAAGCAGAAGCTACGCAACGTGCTATCGTCATTGCAAGTCAGTTGAATTGTCCAATCTATATCGTTCATGTCATGAGCAAAAGTGCTGCTGAAGTCGTTAGAGAATATCGCAAAAGAGGATTCGTTGTATTTGGTGAACCAATTGCCGCAAGTCTTGGAACTGACGGAACAAATTACTGGCACAAATGTTGGCGTCATGCAGCAGCACATGTTATGGGTCCTCCTCTTCGTCCAGATGCAACGACACCAGGATATCTTATGGATTTGCTAGCAAATGGTGACTTAGATTGTACTGGAACCGATAATTGTACCTTCAATGCAAATCAAAAGGCACTTGGAAAAGATGATTTCAGAGCAATACCCAATGGAGTTAATGGTGTTGAAGATCGAATGTCTGTAATTTGGGAGAAGGGTGTTCATGCAGGAAAGATGGATCCATGTAGATATGTCGGAGTTACTAGCTCAGTTGCAGcgaaaatattcaacatttatCCAAAGAAGGGATGTATTGCAGTGGGTAGTGATGCTGATATAGTTATTTGGGATCCAAAAGCAAAAAGAACAATCTCAGTCAAGACTCATCATCAGgcagttgattttaatatatttgagGGCTTGACATGCCATGGTGTTGCCGTTCATACAATCAGCCGTGGAAAAGTTGTTTACAGTAATGGAAAGCTATCTGTTGTAAAAGGTTCTGGTCGCTATGTCGAGACTAAGCCATATTCTCCAGCCGTATATACACGAGTTTTCCAACGAGAAGAGGTATTGAAACCGCAAAAAGTGAAGCGTGATCCCTACACAGGTCCTGTGATTGATTTATCCAAACCGAAGTCACAATCTTCTACCAATGGTGAGGATGTCTCAACTGACCATGATGTAGATACAAATGAACATCACACTGGAAAAGGAACAGGTGGTCCACATAGAGATCTTCATTCATCAACATTCAAATTGTCAGGTGAGCAAGTCGACGACAACGTCCCTCATCGCCCGAAAGTGAGATTACAGAATCCACCAGGTGGAGGCTCGAGTATAATCTTgggataa

Transcript

BRAKERHOCT00005001462

Protein

BRAKERHOCP00005001462.1

MVLGKNFICSKRSDGERLSILLDNRTKTDTVMFEGGVVAELSTAEADALRRQYTKVTDAYACLGVMNLYIDDECYSYLMLVTGCTSIGKICESDIFRISGCTGVALQEPSELDSKVNEVQKLIMSGCFYFSWTAGENPPYDLSLSSQRKHLQKESDNRFFWNRSFHLLLSKFGLNCDKWLVRMTCGSIDIRTIYVGSNQAKACLISRLSSDRAGTRFNVRGTNDEGHVANFVETEQLVINDETVTSFVQTRGSVPLFWEQPGVQVGSHKVKVSRGFEASQPAFDRHISHLKQVYGYQLFINLLGRKEGENSLSMAFKEHLKSSQHSFDTRIINFDYHSHCRGGKTAKLDELMEKAKPSLENFKFFSYYNGNVTSSQGGTIRTNCLDCLDRTNAVQSKLGMKLLREQLKSIELTDKPGIVDRFQETFKNLWIQNGHQVSRMYSGTGALDSSVKGTVASKLHDGAVSVKRTIKNNFFDGSRQEAIDILLVGNTFIGPIGERARALLHSGFLHSSPSILRELCLKHHEYSEMTEARVCVGTWNVNGGRHFRSIAYKHQSMHDWLLDCPKLAPEGIMDKEADFSTPPDIFAIGFQELVDLNISNIISTSSTQKKQWGSELQRIISRDNPYVLITVEQLVGVCLYIFVRLHHVPFVRDVAIDSVKTGIKGSANKGAVAIRMRFHSTSLCFVCGHLAAGQSNIDERNNNYHDISRRIAFPMGSSLLSHDYVFWCGDFNYRIDLPNEVTKDLVSVQDFHQLQCSDQLSLQKAEGKIFRSYIEGPINFPPTYKYDLFSDDYDTSEKFRTPAWTDRVLWRRKKYRKFDTENRSGSIDAVDDSDQENEEDGEEIEDEKQTDVWNPGQLCYYGRAELRTSDHRPVIAMLDIEVQHVDNKKLMKTHESVMQSFGPADPTIIVRSSNVSDDEMLDVNGLIDLFEPFGAIILVRIVEQDVLLTFDNGRSAFQALSCNEKMVGDCQIEVVLKSPETLSSTDLPLQMLVSADIENINNDDNNVTSQTRQRTMSDILSMSFPLDDNSLLIPEKINEQIDYSDDDEDDDGNDKQVFSDQDNVPLNDDNVNSIDSDEEGIIDNEETLIMQRKEELIDSDDEIVEDEKPKLVTKKAPPPRPTSRPGRPPPPKATSSPSNTPPLEKHRPPKPNLPQQKTVDDSKPKPLRPGRPQPMKSTTLSLDDGTTNESIVPQATSKTEGGETPLNKPPPRPIQATTLVDKAKTDESISIPFNVHHLFHVDATNVDQFIENMKKSGGTLKPQRPNILGTLSQSSSNTVTKPITREPVKPKAIPRSNTVSGGPVKPPRRPEPSKSRERPAAPPPRPISVFQEASKPVPPQRPINKRHTMPPQTSEALDKNVKEAPPRPAARLPTAVTVNEEDDELINLPQSKNTPPITKRSDRPSVPKPYAAHPKSRSTDQSNQEQAVDTISNSSLDIDGESISSTNTTSSTSLNIIDSTNEQSNDDSSRHATPDLNIPPPVPDRKDDDILRSKTPGETELGQCNDSISKHKQSLENNTEGDNPTLVPNGTKKAPPPPLPPSFLILFVYLLYCVDIFIPLEKEVWKTIWASNSILIHGGTVVNEDRMFKADVLVTDGLISQVGYGFAVPEDAVKIEADDLYVMPGGIDSHTHMQLPFMGTVAVDDFYHGTKAAVAGGTTMIIDFVIPQKGESLIDNFHKWKAWADEKVCCDYAFHVAVTWWSDQVKKEMATLASEHGINSFKCFMAYKDVFMLDDSQLYKCFANCREIGALAQVHAENGDLIAEGSKKMIALGITGPEGHEMCRPEHVEAEATQRAIVIASQLNCPIYIVHVMSKSAAEVVREYRKRGFVVFGEPIAASLGTDGTNYWHKCWRHAAAHVMGPPLRPDATTPGYLMDLLANGDLDCTGTDNCTFNANQKALGKDDFRAIPNGVNGVEDRMSVIWEKGVHAGKMDPCRYVGVTSSVAAKIFNIYPKKGCIAVGSDADIVIWDPKAKRTISVKTHHQAVDFNIFEGLTCHGVAVHTISRGKVVYSNGKLSVVKGSGRYVETKPYSPAVYTRVFQREEVLKPQKVKRDPYTGPVIDLSKPKSQSSTNGEDVSTDHDVDTNEHHTGKGTGGPHRDLHSSTFKLSGEQVDDNVPHRPKVRLQNPPGGGSSIILG

Uniprot

Uniprot term	Description
O43426	Synaptojanin-1 OS=Homo sapiens OX=9606 GN=SYNJ1 PE=1 SV=2
Q8CHC4	Synaptojanin-1 OS=Mus musculus OX=10090 GN=Synj1 PE=1 SV=3
Q62910	Synaptojanin-1 OS=Rattus norvegicus OX=10116 GN=Synj1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08952	DUF1866	Domain of unknown function (DUF1866)	Domain	Interproscan
PF01979	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF02383	Syja_N	SacI homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR011059	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR011778	Family	Hydantoinase/dihydropyrimidinase	Interproscan
IPR015047	Domain	Synaptojanin-1/2, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR006680	Domain	Amidohydrolase-related	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050378	Family	Metallo-dependent Hydrolases Superfamily	Interproscan
IPR000300	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR002013	Domain	SAC domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11647	HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0004157	Molecular Function	dihydropyrimidinase activity	Interproscan
GO:0006208	Biological Process	pyrimidine nucleobase catabolic process	Interproscan
GO:0016791	Molecular Function	phosphatase activity	Interproscan
GO:0046856	Biological Process	phosphatidylinositol dephosphorylation	Interproscan