Gene detail

Detailed information of BRAKERHOCP00005002170.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_006826135.1, PREDICTED: uncharacterized protein LOC102800653 [Saccoglossus kowalevskii]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005002170

ATGTCAACAGGTTATGGGCCCAGAAGACGAATCTATTTCGATGGAGACGCCGATGGTTACGCTATATGGGAGACACGCTTCTTGAACTATCTGTACACACAAGATAAACACATTTACGAAGCAATTCTGCCGAAGGAACAAACCGAAGATGAcgaaacaaaacaagaaaGACACAAGGAAAAGAACAGAGCGGCATACGCTGAACTCGTACAAGTGCTGGACGAACGCTCTTTACAACTGGTTATGAACGACGCTAACAACGACGGTCGGAAAGCTTTAACCATACTTCGTAGCCATTTTGCAAGTACCGAAAAACCCAGAGTACTGACATTATACACAGAACTAACGACGTTGCAGATGGGCCAAGAAGAGGACGTCACTGACTACCTTTTAATAGGCGAAAAAGCATCAACAGGACTCAGACTCGCAGGTGAGAATATCAGCGATAATCTTGTCATTGCAATGATGTTGAAAGGCCTGCCAGAAAGCATCAGCTCGTTTGTTGTTGTACATACACAACTTGATAAGgACTCTGCACCGGAATTATCTTATCTCCCTTGCAAAGGGCAATTTCTATGGTCTAGAAAAGCTGCATCAACTGACTCTAGGGAACAATTTATTGAAGAATTTTTCTTCTGTTATTTAGAAACCAATCGAATCAAGGTCCTCCCATCAAATGGCTTTGAACAACTATGGATATTGCAGAAGCTtgtGCTTCTTGgtaacaaaattaataagcTAGAGGAAAATTGCTTCCAAGGATTGGCCTCCCTCGCTGTGTTGTCAATGTCTGGTAATAAAGTGAAACGATTAACACAACACATTTTCAAAGGATTATACTATCTAAGACATCTGTTTATTCATGACAATGAAATTGAGATCATTGAACCGAAGGCATTTGTTggattgaaatatttgaatcaaTTaaatCTTGGTGTCAGTGGTATCAAAAGTATCAGTGCTGGTGCCTTTTCTGGTCTGCCGCAACTGCAAAGCCTATATctatatttcaacaacatcacatttCTAGAAGAAggtgtttttgataatttaccAAGATTGCAAGGAATAGCTTGGCATCCCCCACCAAAGCTTTTGAAAGCCCGTCCTAAATTGggtcaaattcaaaataacagaCTGCATTGTGATTGTAATATATTATGGCTCAAAGAATGGCTTATTAAGAATCCCAGAAAGTTAGCTATAGCATGTAAGACACCTCGACAATTTGAAGGCCATAACATCACACATTTGAAGGAAAGTGAACTGTCATGCTGGTCACCATCAATATTGAGAGCCAATCCAGCGATCATGGCTGAAGAAAAAGATATTGTTATCCTAAGCTGTCCATCATTTCCTGGTGGCTCTTACACATGGTTTCATAATGGTTCAGAAATTATTAACATGCCAGGTGTTAGTGTATCGTCTGTTGTTGTACGAATTAATCCTTTTTACGAATTTCATCAAGGGGATTATATATGTGTTGTGAAAAATAAGGGAGGTTCTGCAGCAACGATGATGAATTTACAATTTGGTGAACCTCCTTCTTATATCAGAGAGGACAAGGTCAATGACACTCTAATTGAAACACATGTCAATGCATCTCTACATTTAAATTGTCCAATTCAAGGAACACCGAAGCCTAAATTTAATTGGCGAAGTACAAACAGCGCAGTTTTGGAAAATGATAGATTCTATGTAACAGATAGTGGCAATTTgattataacaaaaattagAGAGAAAGATGCTGGCATTTATCAATGTAACGGAAGCAATCAACTGGGATCTTTAACAATGATTATTCGAATGACAGTGTTACCACCTCAAAAACCTGTAAGCTCATGCAACATGAGTTGTTACAATGGTGGAATATGTCATCAGATATCGAAATGTGAATGTAGAAATGGCTATGGTGGTCACCAATGTCAACTTCCAGCAAAGTCAGGTGTATTTGAAACTAATATTGATGAAGAATCAGGATCAGGCTCAGATGACGAAGGTGACGacttttcaaatgttgttgtttcgTCTGGAGATAGTGACACAGTAttcaatcaaacaattcatgaactcagcaGACACAGGTCAACAGCTAGTGTGGCAGATGTCTTACCAACttga

Transcript

BRAKERHOCT00005002170

Protein

Uniprot

Uniprot term	Description
Q62838	Muscle, skeletal receptor tyrosine protein kinase OS=Rattus norvegicus OX=10116 GN=Musk PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050467	Family	Leucine-rich repeat and fibronectin type-III domain-containing	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45842	SYNAPTIC ADHESION-LIKE MOLECULE SALM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09229	ZKSCAN; KRAB and SCAN domains-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala